Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01413 ATGGAAGACGCTGAAGAATGCATCACTGGGTTATGTTTGGGACTTGGAATGGGAGGGTATGTCCCAAAAAAAGGTAAGCAGGAAGAGAACAGGCCCGTGGTAGACTTAGCGTTTGAGCTTCGTCCAAAAGGGGAAGCCATTAACTTGAATCATGATAAGGTAGAGAGCACAGATTCTGACAACAGCAACTACAACAACGGATGCAGAAAAAAACTCAGGCTTTCCAAGGACCAATCATCCATGCTCGAGAACAGCTTCAAACTGCACAGTACTCTTAATCCGGTCCAAAAACAAGCACTGGCTGATCAATTGAATTTAAAGACAAGACAAGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGCTTCCGTTTCATTGATATAGCTTTGTTTGATCTTGATGAATTGCTTTGCATCAAATATGTGGGTTTTCTCAAAGGTCGATGTTTAGGGGAGACCAAACTGAAGCAGACAGAAGTGGACCGTGAGTGGTTGAAAAAACAGTGTCAAAATCTAAGCGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCATCGCCTATGTGCATTCAACTATCCAAAACGGCAACTCTGACTATGTGCTCTTCGTGCGAGAAACTAGTAAAACTGGATGAAGGAAAGAACAACATAGAGTTAAAGGGTAGAAATTGA 693 0.4214 MEDAEECITGLCLGLGMGGYVPKKGKQEENRPVVDLAFELRPKGEAINLNHDKVESTDSDNSNYNNGCRKKLRLSKDQSSMLENSFKLHSTLNPVQKQALADQLNLKTRQVEVWFQNRRASFRFIDIALFDLDELLCIKYVGFLKGRCLGETKLKQTEVDREWLKKQCQNLSDENKRLKKELQELRALKVGPSPMCIQLSKTATLTMCSSCEKLVKLDEGKNNIELKGRN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01413 230 CDD homeodomain 69 123 IPR001356 GO:0003677
Vimu7g01413 230 Gene3D - 75 121 - -
Vimu7g01413 230 Coils Coil 154 188 - -
Vimu7g01413 230 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Vimu7g01413 230 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 216 - -
Vimu7g01413 230 SMART HOX_1 67 129 IPR001356 GO:0003677
Vimu7g01413 230 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Vimu7g01413 230 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Vimu7g01413 230 SUPERFAMILY Homeodomain-like 61 124 IPR009057 -
Vimu7g01413 230 SMART halz 155 198 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01413 Vimu-Chr7 13486193 13487313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01413 56 213 Homeobox Transcription Factor Family AT3G60390 52.201 7.66e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu7g01413 Homeodomain 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01413 - K09338 gmx:100812222 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01413 7 13486193 13487313 Vimu10g00388 10 2864543 2864908 PCT