Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01406 ATGGGGAACTGTTGCAGTTTTTCATCAGGTGCTAATGGCGATGATCATCCCAACGCGAAGAACCATTTAGGGATGACTCAGTTCTCTGCTGGTCTCAGCAACAGAAGACTAATACAGAATGACAATTCTACTTCTCGTGGGTGTAGCAATCACTTTGGAGGAACCAGTAGTCTGTTTGGGCCAAGTAGTAGTAATAATCACACATCAGGAAATAACACTAGCACGTCGTTTTGGGGCTCTGAGAATAGCCACACCTTTGGAGTCAAAGATGGAGGGGAGTTTCCTCATGGTGAGATCTTGAATGCTCCAAACCTGAGAGTATTTACTTTTGCAGAATTGAGGGCTGCCACCAAAAATTTCGGAGCTGGCAGTGTGATAGGAGAGGGGGGTTTTGGTAGAGTATACAAGGGTTTGATTAGAGGTGAGGGATTGAATATTGCCATCAAGAAATGGAAACCCGAAAGCTTGCAAGGAGTTTCCGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCATCCCAACCTCGTTAAGCTGTTGGGATTTCGGCGAGAGGATAGTGAGCTGTTCCTGGTCTATGAATTCATGCATCGTGGTTCCTTGGATAACCATCTATTTGGAAGTAAGAAATGCGCTGGAGGTGCAAATGTTCGGCCACTTTCTTGGGATACAAGGCTGAAGGTTATGATTGACGCAGCTAGGGGACTGAATTTCCTTCATTCCATGGAAATGAAAATTGTACATCGAGATTTTAAACCCTCAAATATACTACTTGACGAGACATTTACGGCAAAGTTATCAGACTTTGGGTTAGCCAAATCTTTTTCTTCGCTTGATCAGACTCACGTAACAACACGAGTTATGGGAACAGGAGGCTATGCTGCTCCTGAGTACATGGCAACAGGTCGTTTGAAAGTGAAAAGTGACGTGTATACATTTGGAATTGTTTTGGTGGAGGTGCTGACAGGGAAAAGAATACAAGATATATGGCGATTGGTGAAGCAAGAGTCCTTGACGGATTGGCTCAAATCAAATATACTAAATAGAGGGAAAATAAGAATGAATATGGATGCAAAGTTGGAAGGAAAGTATCCAACCAACTTGGCTTTAGAGGTAGCTCAACTAGCTCTCAAATGCATCCGAACAGAAGCCAAAGTGAGGCCATCAATGAAAGAAGTTCTTGAAAGATTGGAACAGATTGAAGCAGCTAATGAGAAACCAGCTGACAACAGTTATAACAGAAGACGTGTTAATCGTTCCCAGGAGGTTCAACAACACGATCAGCCAGAAAAAGGAAGTGGACGTTGA 1311 0.4333 MGNCCSFSSGANGDDHPNAKNHLGMTQFSAGLSNRRLIQNDNSTSRGCSNHFGGTSSLFGPSSSNNHTSGNNTSTSFWGSENSHTFGVKDGGEFPHGEILNAPNLRVFTFAELRAATKNFGAGSVIGEGGFGRVYKGLIRGEGLNIAIKKWKPESLQGVSEWQSEVNFLGRLSHPNLVKLLGFRREDSELFLVYEFMHRGSLDNHLFGSKKCAGGANVRPLSWDTRLKVMIDAARGLNFLHSMEMKIVHRDFKPSNILLDETFTAKLSDFGLAKSFSSLDQTHVTTRVMGTGGYAAPEYMATGRLKVKSDVYTFGIVLVEVLTGKRIQDIWRLVKQESLTDWLKSNILNRGKIRMNMDAKLEGKYPTNLALEVAQLALKCIRTEAKVRPSMKEVLERLEQIEAANEKPADNSYNRRRVNRSQEVQQHDQPEKGSGR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01406 436 MobiDBLite consensus disorder prediction 1 15 - -
Vimu7g01406 436 MobiDBLite consensus disorder prediction 405 436 - -
Vimu7g01406 436 Gene3D Phosphorylase Kinase; domain 1 104 196 - -
Vimu7g01406 436 PANTHER OS01G0588500 PROTEIN-RELATED 68 402 - -
Vimu7g01406 436 MobiDBLite consensus disorder prediction 1 24 - -
Vimu7g01406 436 ProSiteProfiles Protein kinase domain profile. 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01406 436 Pfam Protein kinase domain 124 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01406 436 SUPERFAMILY Protein kinase-like (PK-like) 101 398 IPR011009 -
Vimu7g01406 436 Gene3D Transferase(Phosphotransferase) domain 1 197 427 - -
Vimu7g01406 436 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 197 412 - -
Vimu7g01406 436 ProSitePatterns Protein kinases ATP-binding region signature. 126 150 IPR017441 GO:0005524
Vimu7g01406 436 FunFam receptor-like protein kinase FERONIA 92 196 - -
Vimu7g01406 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vimu7g01406 436 CDD STKc_IRAK 126 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01406 Vimu-Chr7 13449798 13451637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01406 91 422 Receptor kinase-like Gene Family AT4G02010 43.620 2.48e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g01406 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01406 - - gmx:100813304 603.208