Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01403 ATGGCAGTAGATCTGGCAGCTGTTGCCAAGATTAGGATGGAAGAACAGATAGCCATTGAAGAAGCAGCTTCCGCTGGATTGAAAAGTATGGAGCATCTCATTCGTGTTCTTTCCTCCCAAATCCCTTCCTCTTCTGCTTCTGCCTCTGCCTCCTCCTCTTCTTCCACACACCACAACCGTCTTAATCTCAACCACCTTGACTGCACTGAAATCACCGACTTCACTGTCTCCAAGTTCAAACAAGTCATCAACTTGTTGAATCGCACTGGTCACGCTCGCTTTCGCCGCGCACCTTCTCATCCCTCCCCCTCCCCCTCTCTTCCTTCTCCACCGCAGCCACACGCTCAAAAACTCACTCTTCATTTTGCAAACCCCAAGATCAAGTCAAATCCCAATCCCAACCCCAACCCCAACCCTTCTTCCACAGATTTGTCGGTTTCTCAATATTCCAAGACCAAAGACACCGCCTTTAGCATATCCCCTCCCATCTCCACCACCACCTCCTCCTTCATGTCCTCTGTCACGGCCGACGGCAGCGTCTCCGACGGCAAGATCGGCCCCGCCATCCTCGCCTCCGGGAAGCCTCCTCTCTCCTCATCCCACCGAAAAAGGTGTCACGACGCCACCCTCTCCGCCGGGAAAACCTCATCCTCCGCCCACTGTCATTGCTCCAAGAGAAGGAAATCTCGTATGAAACGAATGATTCGAGTGCCGGCGATAAGTTCGAAGATCGCCGATATCCCTGCGGACGAGTACTCGTGGAGAAAGTATGGTCAAAAACCCATCAAGGGGTCACCCTACCCACGAAAGCACGTGGAGCGAGCTCAGGATGACCCTAACATGCTCATCGTTACCTACGAGGGAGAGCACCGTCATCCACAGACGCGTGTGCCGGAAGGCGGCGTGCCCGGCCCCGTGGCTTTCGATCGAGAAAGTGTGAGACCGACAGTGATGAGTGATGAGCGGTGTTTGCAATTAACTGAGGAAGTTGTAACAGTGGGAGAAAAAGAAAAAGAAAGGAAGTTCTTGCAAGCAAGGGAAAGTAAAGAAAAGAAGCAAAGTCAACTTTTGCTTTGTTGGTTGTGA 1086 0.5221 MAVDLAAVAKIRMEEQIAIEEAASAGLKSMEHLIRVLSSQIPSSSASASASSSSSTHHNRLNLNHLDCTEITDFTVSKFKQVINLLNRTGHARFRRAPSHPSPSPSLPSPPQPHAQKLTLHFANPKIKSNPNPNPNPNPSSTDLSVSQYSKTKDTAFSISPPISTTTSSFMSSVTADGSVSDGKIGPAILASGKPPLSSSHRKRCHDATLSAGKTSSSAHCHCSKRRKSRMKRMIRVPAISSKIADIPADEYSWRKYGQKPIKGSPYPRKHVERAQDDPNMLIVTYEGEHRHPQTRVPEGGVPGPVAFDRESVRPTVMSDERCLQLTEEVVTVGEKEKERKFLQARESKEKKQSQLLLCWL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01403 361 Pfam Plant zinc cluster domain 202 246 IPR018872 -
Vimu7g01403 361 Gene3D WRKY domain 235 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g01403 361 ProSiteProfiles WRKY domain profile. 243 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g01403 361 MobiDBLite consensus disorder prediction 139 178 - -
Vimu7g01403 361 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 295 IPR044810 GO:0003700
Vimu7g01403 361 SMART WRKY_cls 248 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g01403 361 MobiDBLite consensus disorder prediction 209 230 - -
Vimu7g01403 361 MobiDBLite consensus disorder prediction 94 178 - -
Vimu7g01403 361 SUPERFAMILY WRKY DNA-binding domain 246 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g01403 361 Pfam WRKY DNA -binding domain 250 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01403 Vimu-Chr7 13425704 13427091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01403 1 299 WRKY Transcription Factor Family AT2G24570 46.087 2.76e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g01403 Plant_zn_clust 6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01403 - - var:108322692 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01403 7 13425704 13427091 Vimu7g01403 7 13425704 13427091 ECH
Vimu7g02792 7 23487180 23489417 Vimu7g01403 7 13425704 13427091 PCT
Vimu7g01403 7 13425704 13427091 Vimu10g00383 10 2813140 2814320 PCT