Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01398 ATGGAAAAACATATTATTCCTGTAACGATGGATAACCCTGATTTTGCAGTAGCCATGGATAGGTTAAAGCAGGGGCAGAAGAAGAAAAACACGGGGAGGAAGAAGATTGTGATAAAGAAGATTGAGAAATCAAGCAACAAGCAAGTGACATTCTCGAAAAGAAGAGCAGGGTTGTTCAAAAAAGCGAGTGAACTGTGCATTCTGTGCAATGTTAACATAGCCATAATAGTGTTTTCTCCGGCTGAAAAGTTGTTCTGTTTTGGGCATCCAGACGTGGAAGGCATTGTTGGAAGGTACCTGAAGGGAGAGAAAGTGTTTGTAGCATCAGAGAGAAGAGGGTCATATGAAGAAAGCAACATGCAATACGAGAAGGCAGTGAAGAATTTGGCGTTGGAAAAGAAGAATCTGATAGAAACTGAAAAAATGGTAAAGGGTTTGAGCAGAAGGTGGTGGGAGGACTCCATTGATGAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTGTCGCTTTATGAGTTGAGGAAGAAATTAACAGAAAGGGCTGCTCAATTGTTCATGCTTTCAATTCAATGA 573 0.4101 MEKHIIPVTMDNPDFAVAMDRLKQGQKKKNTGRKKIVIKKIEKSSNKQVTFSKRRAGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDVEGIVGRYLKGEKVFVASERRGSYEESNMQYEKAVKNLALEKKNLIETEKMVKGLSRRWWEDSIDEMSERELEQFMVSLYELRKKLTERAAQLFMLSIQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01398 190 SUPERFAMILY SRF-like 32 101 IPR036879 GO:0003677|GO:0046983
Vimu7g01398 190 FunFam Agamous-like MADS-box protein AGL62 43 108 - -
Vimu7g01398 190 Coils Coil 119 139 - -
Vimu7g01398 190 PANTHER MADS BOX PROTEIN 33 179 - -
Vimu7g01398 190 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Vimu7g01398 190 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Vimu7g01398 190 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Vimu7g01398 190 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Vimu7g01398 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
Vimu7g01398 190 Gene3D - 44 112 IPR036879 GO:0003677|GO:0046983
Vimu7g01398 190 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01398 Vimu-Chr7 13386369 13386941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01398 32 184 Type I MADS-box Gene Family AT2G24840 45.679 5.28e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu7g01398 SRF-TF 6.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01398 - - vra:106766532 245.743