Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01390 ATGAGCTTCTCCAAGGGTTATCCTGGCAGCCAGACGCCGGGTGATATTGAGGCCGGGTCTCCCACTGGATGCTCTGATGATTTTGATGATGGAGACTTTTCTGCTGATCCATTTGATGTTACCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGCTGGAGGCAAGCAGCACTGGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAAAAGAAGAGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCTGCATATCGATTCAAGGAAGCTGGGCAATTGAATGGGCTTGGAACTATAAAACCTTATTTGAGCTCCACCGGAGAAGAATTTTCAATTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGAGACACTGCTACTCTGCGGGAATGTGAAGGGGTTGTGGGGTTATCAAATTTATTGAAAACCAATTTAGAGAAGGGAATTCGAGGTGATGATACTGACTTGTTAATACGGAGGAATGCATTTGGTTCCAACAACTACCCTCGAAAGTCTGGAAGAAATTTTTTGTCGTTTATGTGGGATGCTTGCAAGGATTTGACCTTGATTATTCTAATGGTAGCTGCAATGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTATCCAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGATCTAAATGAGCACAAGAGAAACATTCATTTGGAGGTCATTCGAGACGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAACCAGGTCCCCGCTGATGGAGTTTTGATCTCTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACCGGGGAGAGCAAAATTGTCGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAATGGAACTATGCTGGTAACGGCTGTTGGTATTAATACTGAATGGGGGCTTCTGATGGCTAGCATTTCAGAAGACAATGGTGAAGAAACACCTTTGCAGGTGCGCTTAAATGGTGTCGCTACCTTAATTGGTATTGTTGGACTCTCTGTGGCTGTTATCGTTCTGATAGTGCTACTGGCCAGGTATTTCTCTGGGCATACTAGAAACACAGATGGAAGTGTTCAATTTATAGCGGGCAAAACCAAATTTGGTGATGCTATTGATGGAGTGATCAAGATATTCACTGTTGCGGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGTTGCCTTTAGCCGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCGGATAAAGCTTTGGTGAGGAGGCTCTCTGCCTGTGAGACAATGGGGTCGGCCACAACCATCTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGCATTGGTGGGAAGATAACTCCTCATCATACACCAGACCAGTTGTCTGGTATGCTACGCTCTTTGCTGTTTGAAGGTGTTGTGCAGAACACTAATGGAAGTGTTTATGTCCCTGAGAGTGGTAGTGATATTGAGATTTCTGGATCACCAACCGAAAGGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGCATTTTGATGATGTCAGATCACAATCATCAATTGTCCATGTCTTCCCCTTTAATTCAGACAAAAAGCGAGGAGGAGTTGCAATACAGATGACCACTCCGCAGACAGACTCTGAAATTCATATACATTGGAAAGGTGCGGCTGAGATAGTCCTTGGATGCTGTACAGGGTATATTGATGTTAATGATCAGCTGGTGGAGATGGATGAAGAGAAGATGTCATATTTTAAAAAGGTTATTGAACATATGGCTGCTGATAGTCTACGGTGTATTGCGATTGCATTTAGATCATTCGAAATGGAGAATGTTCCAACTGGTGAAGAACTTGCTCACTGGTCATTACCAGAGGATGATCTTTTTTTATTGGCTATTATTGGCCTGAAGGATCCTTGTCGACCTGGGGTCAAAGATGCAGTGCAGCTTTGCCAAAAGGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTCAAAACTGCAAAAGCAATAGCTGTGGAATGTGGAATTCTTGGTTCAATCTCTGAAGCTACAGAGCCAGTCATCATTGAAGGAAAAAGATTTCGTGCCTTGACAGATGAAGGGAGAGCACAAATTGTTGACAGCATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCCGCACTACATGAGGCCGATATTGGTCTTTCAATGGGTATACAAGGAACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCGGTTGTGAAGGTTGTCAAATGGGGGCGGTCAGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCTGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACAGGCGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTGGCCTTGGCAACTGAACCACCAACTGATTCCCTAATGGATCAGCTTCCAATGGGCAGACGTGAACCGCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGTCGGTAATGTTTGGAAACTTTCAGGCAATTTATCAAGTTTCTGTGTTGCTTATACTTAATTTCCAAGGTGTGAAATTACTGGGTTTGAGGAATGAACCCAACCGCCCGGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCTTTTGTTTTTTGTCAAGTAAGTCCTTATCATCACCAATTAATAGGAATTTACAAAGTTCTAAGCTTCAGAGAGAAGAACAAAATCATTGAATGGGAAGGCAAACTGGTTCATTTGGACCTAAAAGGTGCTGTTGGAGTCACCTCAAAGAACTCCGTGGCAGCTTCGGGTTTTCCCCATGCTAGACACAGCACAATATTGGGTCGAAAAAATGTCCTTCCAAATCTGCAGGTCTTTAATGAATTTAATGCCCGAAAGCCATATAGCTTCAACATTTTCAAGGGAGTCACGAGAAACTACCTCTTTATGGGGATAGTGGCAACAACTGTCGTGCTCCAGGTTAGCAATAGATACTGA 3309 0.4243 MSFSKGYPGSQTPGDIEAGSPTGCSDDFDDGDFSADPFDVTRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEEKKRVLRIVIVHTRAIQAAYRFKEAGQLNGLGTIKPYLSSTGEEFSIGQEQLSSISRDRDTATLRECEGVVGLSNLLKTNLEKGIRGDDTDLLIRRNAFGSNNYPRKSGRNFLSFMWDACKDLTLIILMVAAMASLALGIKSEGIQEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLISGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGNGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLSVAVIVLIVLLARYFSGHTRNTDGSVQFIAGKTKFGDAIDGVIKIFTVAVTIVVVAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEACIGGKITPHHTPDQLSGMLRSLLFEGVVQNTNGSVYVPESGSDIEISGSPTERAILEWGIKLGMHFDDVRSQSSIVHVFPFNSDKKRGGVAIQMTTPQTDSEIHIHWKGAAEIVLGCCTGYIDVNDQLVEMDEEKMSYFKKVIEHMAADSLRCIAIAFRSFEMENVPTGEELAHWSLPEDDLFLLAIIGLKDPCRPGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILGSISEATEPVIIEGKRFRALTDEGRAQIVDSILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQLPMGRREPLVSNIMWRNLLIQSVMFGNFQAIYQVSVLLILNFQGVKLLGLRNEPNRPAIKVKNSLIFNAFVFCQVSPYHHQLIGIYKVLSFREKNKIIEWEGKLVHLDLKGAVGVTSKNSVAASGFPHARHSTILGRKNVLPNLQVFNEFNARKPYSFNIFKGVTRNYLFMGIVATTVVLQVSNRY 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01390 1102 Gene3D - 497 697 IPR023299 GO:0000166
Vimu7g01390 1102 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Vimu7g01390 1102 SFLD p-type atpase 469 849 IPR044492 -
Vimu7g01390 1102 CDD P-type_ATPase_Ca_PMCA-like 172 930 - -
Vimu7g01390 1102 SUPERFAMILY Calcium ATPase, transduction domain A 265 360 IPR008250 -
Vimu7g01390 1102 Gene3D - 195 964 - -
Vimu7g01390 1102 SUPERFAMILY HAD-like 485 902 IPR036412 -
Vimu7g01390 1102 Gene3D - 484 842 IPR023214 -
Vimu7g01390 1102 SFLD Haloacid Dehalogenase 469 849 - -
Vimu7g01390 1102 Pfam haloacid dehalogenase-like hydrolase 484 811 - -
Vimu7g01390 1102 SUPERFAMILY Calcium ATPase, transmembrane domain M 149 991 IPR023298 -
Vimu7g01390 1102 NCBIfam calcium-translocating P-type ATPase, PMCA-type 137 991 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu7g01390 1102 MobiDBLite consensus disorder prediction 1 28 - -
Vimu7g01390 1102 Pfam Cation transporting ATPase, C-terminus 882 992 IPR006068 -
Vimu7g01390 1102 FunFam Calcium-transporting ATPase 497 697 - -
Vimu7g01390 1102 FunFam Calcium-transporting ATPase 195 252 - -
Vimu7g01390 1102 FunFam Calcium-transporting ATPase 46 102 - -
Vimu7g01390 1102 Gene3D - 171 363 - -
Vimu7g01390 1102 PANTHER CATION TRANSPORTING ATPASE 112 1098 - -
Vimu7g01390 1102 PRINTS H+-transporting ATPase (proton pump) signature 797 813 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01390 1102 PRINTS H+-transporting ATPase (proton pump) signature 643 661 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01390 1102 PRINTS H+-transporting ATPase (proton pump) signature 829 854 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01390 1102 Pfam Cation transporter/ATPase, N-terminus 149 211 IPR004014 -
Vimu7g01390 1102 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Vimu7g01390 1102 FunFam Calcium-transporting ATPase 814 995 - -
Vimu7g01390 1102 Gene3D - 47 102 - -
Vimu7g01390 1102 FunFam Calcium-transporting ATPase 242 363 - -
Vimu7g01390 1102 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 694 IPR023299 GO:0000166
Vimu7g01390 1102 PRINTS P-type cation-transporting ATPase superfamily signature 797 816 - -
Vimu7g01390 1102 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Vimu7g01390 1102 PRINTS P-type cation-transporting ATPase superfamily signature 712 722 - -
Vimu7g01390 1102 PRINTS P-type cation-transporting ATPase superfamily signature 821 833 - -
Vimu7g01390 1102 PRINTS P-type cation-transporting ATPase superfamily signature 690 701 - -
Vimu7g01390 1102 PRINTS P-type cation-transporting ATPase superfamily signature 311 325 - -
Vimu7g01390 1102 FunFam Calcium-transporting ATPase 9 plasma membrane-type 341 511 - -
Vimu7g01390 1102 Pfam E1-E2 ATPase 265 465 - -
Vimu7g01390 1102 FunFam Calcium-transporting ATPase 691 842 - -
Vimu7g01390 1102 NCBIfam HAD-IC family P-type ATPase 764 877 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01390 1102 NCBIfam HAD-IC family P-type ATPase 428 511 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01390 1102 NCBIfam HAD-IC family P-type ATPase 232 403 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01390 Vimu-Chr7 13328484 13344648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01390 2 990 Primary Pumps ATPases AT5G57110 69.192 0.0 1371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01390 K01537 - gmx:100790157 1627.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01390 7 13328484 13344648 Vimu7g01390 7 13328484 13344648 ECH
Vimu7g01390 7 13328484 13344648 Vimu10g00376 10 2738089 2756772 PCT