Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01382 ATGGACAATATGGGTGGGGAGTACAGCCATTTCTGGGACACCTTCTTCCAAAACCAAGAGCTTGATAGCTGGGCAATGGATGAGGCGGCGATGTCTGGGTACTATGATTCAAGCTCTCCCGACGGTGGTGCTTCATCGATGGCATCAAAGAACATTGTTTCGGAGAGGAATAGGAGGAAGAAGCTGAACGAAAGGCTCTTTGCGCTTAGAGCAGTGGTCCCCAACATCAGTAAGATGGACAAGGCTTCTATCATTAAGGATGCTATTGAATACATCCAGCACTTGCATGAACAAGAGAAGAGAATCGAAGCAGAGATTTTGGATCTGGAATCTGGGAAGCTCAAGAACCCAAACTATGAATTTGAGCACGACCTGCCTATTCTCCTCAGGTCTAAGAAGAAGAGAACGGAACAACTATTTGATTCTGCCACTTCAAGAAATTCCCCAATTGAAGTAATTGAGCTGAGGGTTGCATACATGAGAGACAAGACGTTTGTGGTGAGCTTGACATGTAGTAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTCAAGATCATTGCAGCCAATATCACTTCTTTTTCAGGAACACTTTTGAAGACTGTCTTCATTGAGGCTGATGAAGAAGAGAAAGATGTTTTGCAGATAAAAATTCAGACAGCAATTTCAGCTCTGAATGGTCCTCAAAGCCCAATGAGTATCTGA 723 0.4343 MDNMGGEYSHFWDTFFQNQELDSWAMDEAAMSGYYDSSSPDGGASSMASKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKRIEAEILDLESGKLKNPNYEFEHDLPILLRSKKKRTEQLFDSATSRNSPIEVIELRVAYMRDKTFVVSLTCSKRTDTMVKLCEVFESLKLKIIAANITSFSGTLLKTVFIEADEEEKDVLQIKIQTAISALNGPQSPMSI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01382 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 109 IPR036638 GO:0046983
Vimu7g01382 240 Pfam Helix-loop-helix DNA-binding domain 53 96 IPR011598 GO:0046983
Vimu7g01382 240 Gene3D - 44 112 IPR036638 GO:0046983
Vimu7g01382 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vimu7g01382 240 SMART finulus 52 101 IPR011598 GO:0046983
Vimu7g01382 240 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 112 - -
Vimu7g01382 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 38 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01382 Vimu-Chr7 13220053 13225577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01382 2 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.813 2.18e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g01382 HLH 4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01382 - - gmx:100803916 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01382 7 13220053 13225577 Vimu7g01382 7 13220053 13225577 ECH
Vimu7g01382 7 13220053 13225577 Vimu10g00365 10 2596182 2597663 PCT