Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01378 ATGTCTTCCTGTTTGACCGGAGCTGGAGGAAGAACCTACGGATTCGATTTCGAATTTGTTAAATCTCCGTCTTCCTCCACCAGAACCTCACACACCTCTTCTTCGCCTTCTTCAACAATCTCCGAATCGAGCAATTCGGCTGCGCGTGCAATCTCCACCAAGAAACCCAGAACTCAGAGAAAGCGGCCGAACCAAACCTACAATGAAGCAGCGGCACTTCTATCCACGGCCTACCCGAACCTCTTCTCTACAAAGAACCTCAAAACGCAGGGGAAATTCGCAAAGCCCGCATCGGAGAATTTCGATTATGACTCTTCGGAGCTGTTTTTGCCGTTCAGGGTTTTGGACGGATCCTCTTCGTGTTTCCTTCTCGACCAACCGGGCCCCAAGCCCATGGAGAGGCCCAAAGTGGTGAGCGTGCAAGAGAAGGCGTGTGGGAGCCCCGGGGAGATAAGCTCCGTAGTCAATTTCAATTCCCTCGAATTGAACGACGATTGCGAAGAGAGCCTTGACGCGGAATCGATTCTCGACGAGGAAATTGAAGAAGGGATCGATAGCATCATGGGGAGCAGGGTTCAAGAAATCTCCAACGACGCCGTCAATAACTTTCCCTGGATAATGCCTTTTGGCGGGAAATCGGACTTCCCCAGACCCCGTGTCAGCGCTCTCCGACACGTCGACGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCATCAGATATCTCCCAAAATTAACACCAAGCCTCCTCCGGTGACCTCCGACAAGAAGATGAAGAAGAAGAAGGTGACCGCGATTACGGCGACGGAGAAACCGGCCGTGGTGGAGTTGAAGAATGCTGAATTGCCCAAACCGAAACAAGGTTTGATGTTGAAATTGAATTACGAAGACGTTCGGAGCGCTTGGTCCGACCGAGGGATACCGTTCGCAGACGATAGCCCTTTGGCCGACTTGCCGGAAACTGACGTCACGGCGCGGCTGTCGCAAATTGATTTGTGGTGGGACAATGGCGGAGTGAGAGAAGCTAGCGTGCAGCGCTACAAAGAGAAGCGGCGAACGCGACTGTTCTCAAAGAAGATCAGATACCAGGTGAGGAAGGTCAACGCAGATCGACGGCCCAGAATGAAGGTACGAGTGAGTTGA 1146 0.5236 MSSCLTGAGGRTYGFDFEFVKSPSSSTRTSHTSSSPSSTISESSNSAARAISTKKPRTQRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKFAKPASENFDYDSSELFLPFRVLDGSSSCFLLDQPGPKPMERPKVVSVQEKACGSPGEISSVVNFNSLELNDDCEESLDAESILDEEIEEGIDSIMGSRVQEISNDAVNNFPWIMPFGGKSDFPRPRVSALRHVDDGNWWNFPAVDIHQISPKINTKPPPVTSDKKMKKKKVTAITATEKPAVVELKNAELPKPKQGLMLKLNYEDVRSAWSDRGIPFADDSPLADLPETDVTARLSQIDLWWDNGGVREASVQRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKVRVS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01378 381 MobiDBLite consensus disorder prediction 22 53 - -
Vimu7g01378 381 ProSiteProfiles CCT domain profile. 341 381 IPR010402 GO:0005515
Vimu7g01378 381 MobiDBLite consensus disorder prediction 22 64 - -
Vimu7g01378 381 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 379 - -
Vimu7g01378 381 Pfam CCT motif 341 379 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01378 Vimu-Chr7 13182086 13183837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01378 285 379 C2C2-CO-like Transcription Factor Family AT1G68520 44.643 1.12e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g01378 CCT 7.1e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01378 - - gmx:100810303 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01378 7 13182086 13183837 Vimu7g01378 7 13182086 13183837 ECH