Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01375 ATGCGGGACAGCGTGAAGAAGTCAAACGACAAAGGATCTAAAAAATCTGGTCATTTGAAGGTACGTACAAAAGGGAAGAAGGATAAAATGAAAGTGGAATCAAAATCTCACACAAAAAACGTTGGCACTGACGTATCAAAGAAGAGAGTTATCTCTTCCCTCAAGATCAAAGGACCTCGTAAGGATTCTTCAGATAAGAAATTGACTACTGGACAGAAATTGCCTTTGAAGAACAGAAAATCTTCACAGAAGCCATCCTCAAAGTTACCAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGAAAGATGCTGATGGGGAGGTAAAGCTTCAAAAAATGAAGAGAAAGAGAACAAAGAAAAGACAAAGGAATAACTTGGATCATGATGATCCTTCACGCCTGCAGAGGAGAGCACGGTATCTTTTAATCAAAATGAAGCTGGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATCAGGCCAGAAAAGGAGCTACAACGAGCAAGGAAGCAAATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAATTGGATTCCCTTGGTTCATTGAGTTGCACTGAAGATTCGGCTATTGCTCCAGGCGGATCTGGTTGTCAAGAACATATATTCTGTGCTAAGTGCAAAATGCGTGAAGAACCTCCACATAATGATGTTATACGATGCTATGGTACATGCAAGCGTGCTTTTCACCAAAAATGTGTGGAACCTTCTTTAGACACTGAAAATGGTCCTCCTGCAGGGCAGGACTGGTTTTGTAATTTTTGTGAATGTAAGATGGAAATACTGGAAGCTATGAATGCTCATCTTGGAACTCACTTCTCCTTGCACAGTGCTTGGCAGGATGTATTCAAAGAAGAGGCTGCTATCCCTGATGGTGAGACTACATTACTGAATCCTGAAGAAGAATGGCCGTCAGATGATTCTGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAACCACAATATCAACATGGAAGGAACTAATGATAGTGCGTCTGATGATTTAAGTAGTTCTACCAGTCTGTGTTATTCCGATGATGAACATTCTCCAGTACATGGTGTCAGTCACGAATATCTTTTTGCCAATACCAGCATAGATTCTGATGAGTCAGAGGACAAAGCCTGTGGGCGTAGGCAGCGAAAAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGGAAGGAAGCTCCTGCATATGAACAATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTGTGATGCTGTTGATTCTCTTATGACGTTGCATGAAAGTGAGAATATACACCCCAATAATGAGCACAACAACATGACAAAAAACATTTCTTCAGGCACAAATATCAAAAGGCATTGTTTTAGGATTCCACGTGATTCAGTTGAGAAGCTTCGCCAAGTTTTTGCTGAGAATGAACTTCCTCCAAGATCTATTAGAGAGGATCTTTCAAAAGAGCTAGGACTTGACACTGAAAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTGGCGCTTAAAAGTAGAAAGCATCAAGCAGAAGGAGCAGCAAATCAACATATGGGAATCACTTCCACAAAGAACTCCACATTACAAAATCAGGAGAAAACTGATCTTTTGAAACCAAAGACCTTGAAAATTATTACAAGTCATTCCCAGAAGGATGTTAAAAATGTCAGTGGAAGAAAGAAAATTAAGTTTTCTAGCAAGAAAAGACAACCAGAAATTCCTCCACCTCCTGGAGAAAATGGCAACAAGGACTCAATGGAGATGAGTGATGATGTGAGCTTGAAGAAACTATTGAAGAAAAAAAAGAAGAGGTTGGTAAAGTTTACATTTGGAGGAGATTCTCAGACGGCAGAGTTGGAATTGGAAAGATTGTGCAAATTGAAGCAAAAAGTAATTAGTATGAAGGAAAAATTAACAAGAATTCAAAGGTTGGATGTGAAGGGTTCAGATGAAGCCCATTCTAATGAACAAGCATCCATTGTATATGTACCCACAGCTGTATTAAGGGAAAAAACTGAATGA 2109 0.3988 MRDSVKKSNDKGSKKSGHLKVRTKGKKDKMKVESKSHTKNVGTDVSKKRVISSLKIKGPRKDSSDKKLTTGQKLPLKNRKSSQKPSSKLPGKKASLSSRKEGKDADGEVKLQKMKRKRTKKRQRNNLDHDDPSRLQRRARYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSCTEDSAIAPGGSGCQEHIFCAKCKMREEPPHNDVIRCYGTCKRAFHQKCVEPSLDTENGPPAGQDWFCNFCECKMEILEAMNAHLGTHFSLHSAWQDVFKEEAAIPDGETTLLNPEEEWPSDDSEDDDYDPERKEDNHNINMEGTNDSASDDLSSSTSLCYSDDEHSPVHGVSHEYLFANTSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKEAPAYEQLSEDEDWGPGKRKRREKECDAVDSLMTLHESENIHPNNEHNNMTKNISSGTNIKRHCFRIPRDSVEKLRQVFAENELPPRSIREDLSKELGLDTEKVSKWFKNARYLALKSRKHQAEGAANQHMGITSTKNSTLQNQEKTDLLKPKTLKIITSHSQKDVKNVSGRKKIKFSSKKRQPEIPPPPGENGNKDSMEMSDDVSLKKLLKKKKKRLVKFTFGGDSQTAELELERLCKLKQKVISMKEKLTRIQRLDVKGSDEAHSNEQASIVYVPTAVLREKTE 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01375 702 SMART PHD_3 222 275 IPR001965 -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 319 333 - -
Vimu7g01375 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 271 IPR013083 -
Vimu7g01375 702 ProSiteProfiles 'Homeobox' domain profile. 474 534 IPR001356 GO:0003677
Vimu7g01375 702 Pfam Homeodomain 485 529 IPR001356 GO:0003677
Vimu7g01375 702 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 3 700 - -
Vimu7g01375 702 Pfam PHD-finger 222 277 IPR019787 -
Vimu7g01375 702 SUPERFAMILY FYVE/PHD zinc finger 215 280 IPR011011 -
Vimu7g01375 702 ProSiteProfiles Zinc finger PHD-type profile. 220 277 IPR019787 -
Vimu7g01375 702 CDD PHD_PRHA_like 222 274 IPR045876 -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 94 113 - -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 313 369 - -
Vimu7g01375 702 FunFam pathogenesis-related homeodomain protein 476 540 - -
Vimu7g01375 702 Gene3D - 459 541 - -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 26 44 - -
Vimu7g01375 702 SUPERFAMILY Homeodomain-like 477 545 IPR009057 -
Vimu7g01375 702 CDD homeodomain 477 538 IPR001356 GO:0003677
Vimu7g01375 702 MobiDBLite consensus disorder prediction 577 617 - -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 345 366 - -
Vimu7g01375 702 ProSitePatterns Zinc finger PHD-type signature. 223 274 IPR019786 -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 1 134 - -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 1 16 - -
Vimu7g01375 702 MobiDBLite consensus disorder prediction 69 93 - -
Vimu7g01375 702 SMART HOX_1 476 538 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01375 Vimu-Chr7 13159930 13164480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01375 125 539 Homeobox Transcription Factor Family AT4G29940 53.081 6.48e-135 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vimu7g01375 Homeodomain 2.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01375 - - gmx:100817639 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01375 7 13159930 13164480 Vimu7g01375 7 13159930 13164480 ECH
Vimu7g01375 7 13159930 13164480 Vimu10g00359 10 2542371 2548444 PCT