Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01352 TGTAGATCTCTCTGTTCTGCACTGCTCTGTTGCTCTTTCTTCTCAAGCATGGCTTCTGACAAAGCAGCAATCACCCTCGACCAAATCAAGAACGAGACTGTTGATCTGGAACGTATTCCTATTGAGGAAGTGTTCCAGCAGCTGAAATGTTCCAGAGAAGGATTGTCCTCGGAAGAAGGAGCCGATCGGCTTCAGATATTTGGGCCAAACAAGCTAGAGGAGAAAAAGGAAAGCAAATTACTCAAGTTTCTTGGGTTCATGTGGAACCCTCTCTCATGGGTGATGGAAGCTGCTGCTATTATGGCAATTGCTCTTGCAAATGGGGATGGGAGACCCCCAGATTGGCAAGATTTTGTGGGTATCGTCTGCTTGCTTCTGATCAACTCCACCATAAGTTTCATTGAAGAAAATAATGCCGGTAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCTCCCAAGACAAAGGTTCTTAGAGATGGTAAATGGACTGAGCAAGAAGCTGCTATTTTAGTTCCTGGAGACATCATAAGCATCAAACTAGGTGATATAATTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTTTGAAGGTTGATCAATCCGCCTTGACTGGAGAGTCACTTCCTGCTACCAAGGGTCCTGGAGATGAAGTTTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCTGTTGTCATTGCAACCGGTGTCCACACATTTTTCGGGAAAGCAGCTCACCTCGTGGATAGTACTAACCAAGTTGGCCACTTCCAGAAAGTGCTTACAGCAATTGGAAACTTCTGTATTTGTTCCATTGCAGTTGGTATGTTGGCTGAGATCATAGTCATGTATCCGATCCAGCACCGCAAGTACAGAGATGGAATTGACAATCTTCTGGTCCTCTTGATTGGAGGAATTCCCATTGCTATGCCCACTGTGTTGTCAGTGACAATGGCCATTGGTTCTCACAGGCTTTCTCAGCAGGGTGCTATCACGAAGAGAATGACAGCCATTGAAGAAATGGCCGGTATGGATGTTCTTTGCAGTGACAAAACAGGTACACTGACCCTTAACAAGTTGAGTGTAGACAAGAACTTGATTGAGGTCTTTGCAAAGGGTGTCGACAAGGATCATGTGATCCTTCTTGCCGCAAGGGCTTCCAGGACTGAAAACCAGGACGCAATAGATGCTGCCATTGTTGGAATGCTTGCTGATCCAAAAGAGGCAAGGGCTGGGGTAAGAGAAGTACATTTCTTGCCATTTAATCCTGTTGACAAGAGAACTGCTTTGACTTACATTGATGCCGATGGAAATTGGCACCGTGCAAGCAAAGGTGCTCCCGAGCAGATCATGACCCTATGTAACCTCAGGGAAGATGCAAAGAAGAAGGTTCACGGTATTATTGACAAGTTTGCAGAGAGAGGGCTTCGTTCACTTGCTGTTGCTAGACAGGAAGTTCCCGAGAAAACAAAAGAAAGCGCTGGTAGTCCATGGCAGTTTGTTGGTTTGTTGTCACTGTTCGACCCTCCCAGACATGACAGTGCTGAAACTATCCGTAGAGCTCTGCATCTTGGTGTAAATGTCAAGATGATTACTGGGGATCAACTTGCCATAGCTAAGGAGACGGGACGAAGACTCGGGATGGGAACTAATATGTACCCATCCGTTTCCTTGCTTGGTCAAGACAAAGATGCAAGTATTGCTGCTCTTCCAGTGGAAGAGCTTATTGAGAAGGCAGATGGTTTTGCAGGAGTGTTTCCAGAGCACAAGTACGAAATTGTCAAGAAGTTGCAAGATAGGAAGCACATCTGTGGAATGACTGGAGATGGTGTCAATGACGCTCCTGCTTTGAAGAAGGCCGATATTGGAATCGCTGTTGCTGATGCAACTGATGCTGCAAGAAGTGCTTCTGATATTGTATTGACAGAACCTGGTTTGAGTGTTATTATTAGTGCCGTCTTAACCAGCAGGGCCATTTTCCAGAGAATGAAAAACTATACGATATATGCAGTATCTATCACAATCCGAATTGTGTTTGGCTTTATGTTCATAGCATTGATCTGGAAGTTCGACTTCTCTCCTTTCATGGTTTTGATCATTGCCATTCTAAATGATGGAACAATCATGACAATTTCCAAGGATAGAGTGAAGCCATCTCCGTTGCCTGATAGCTGGAAACTGCAAGAAATATTTGCTACCGGGGTTGTGCTTGGTAGTTACTTGGCACTGATGACTATCATATTTTTCTGGGCAATGAAACAAACTGATTTCTTCCCTGAAAAATTCGGAGTTAGACACCTGACTCGTGATGAAATGATGTCTGCTTTGTATTTGCAAGTCAGTATAGTCAGCCAGGCTCTGATATTTGTTACGCGTTCTCGAAGCTGGTCCTTTGTTGAACGCCCTGGAATGCTGTTAGTTATTGCTTTCGTTATTGCTCAGCTGATTGCTACAATCATAGCAGTGTATGCTGACTGGAGCTTTGCAAAGGTGAAAGGAATTGGTTGGGGTTGGGCAGGAGTCATCTGGCTATACAGTATTGTCTTCTACTTTCCACTTGACCTCATGAAGTTTGCCATCCGTTACATATTGAGTGGCAAGGCTTGGCTAAACCTCCTAGAAAACAAGACTGCCTTCACAACCAAGAAAGACTACGGTAAGGAGGAGAGGGAAGCTCAGCTTCGCGAGCTTCACACTCTGAAAGGACATGTTGAGTCTGTGGTGAAGCTGAAGGGTTTGGACATTGATACTATCCAGCAGCACTACACCGTGTGA 2778 0.4503 CRSLCSALLCCSFFSSMASDKAAITLDQIKNETVDLERIPIEEVFQQLKCSREGLSSEEGADRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGDGRPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQSALTGESLPATKGPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMLAEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDADGNWHRASKGAPEQIMTLCNLREDAKKKVHGIIDKFAERGLRSLAVARQEVPEKTKESAGSPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSVSLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVKKLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLQEIFATGVVLGSYLALMTIIFFWAMKQTDFFPEKFGVRHLTRDEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGMLLVIAFVIAQLIATIIAVYADWSFAKVKGIGWGWAGVIWLYSIVFYFPLDLMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01352 925 PRINTS P-type cation-transporting ATPase superfamily signature 608 627 - -
Vimu7g01352 925 PRINTS P-type cation-transporting ATPase superfamily signature 525 535 - -
Vimu7g01352 925 PRINTS P-type cation-transporting ATPase superfamily signature 349 363 - -
Vimu7g01352 925 PRINTS P-type cation-transporting ATPase superfamily signature 503 514 - -
Vimu7g01352 925 PRINTS P-type cation-transporting ATPase superfamily signature 631 643 - -
Vimu7g01352 925 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Vimu7g01352 925 Gene3D - 152 236 - -
Vimu7g01352 925 Pfam haloacid dehalogenase-like hydrolase 345 622 - -
Vimu7g01352 925 NCBIfam HAD-IC family P-type ATPase 121 370 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01352 925 NCBIfam HAD-IC family P-type ATPase 583 697 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01352 925 SFLD Haloacid Dehalogenase 331 659 - -
Vimu7g01352 925 SUPERFAMILY HAD-like 345 655 IPR036412 -
Vimu7g01352 925 SFLD p-type atpase 331 659 IPR044492 -
Vimu7g01352 925 SUPERFAMILY Calcium ATPase, transduction domain A 152 249 IPR008250 -
Vimu7g01352 925 Gene3D - 114 833 - -
Vimu7g01352 925 Pfam Cation transporter/ATPase, N-terminus 39 101 IPR004014 -
Vimu7g01352 925 FunFam Plasma membrane ATPase 500 656 - -
Vimu7g01352 925 PANTHER CALCIUM-TRANSPORTING ATPASE 37 895 - -
Vimu7g01352 925 Gene3D - 889 925 - -
Vimu7g01352 925 NCBIfam plasma-membrane proton-efflux P-type ATPase 54 824 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu7g01352 925 FunFam Plasma membrane ATPase 152 236 - -
Vimu7g01352 925 ProSitePatterns E1-E2 ATPases phosphorylation site. 351 357 IPR018303 -
Vimu7g01352 925 SUPERFAMILY Calcium ATPase, transmembrane domain M 35 865 IPR023298 -
Vimu7g01352 925 FunFam Plasma membrane ATPase 361 508 - -
Vimu7g01352 925 Gene3D - 346 645 IPR023214 -
Vimu7g01352 925 Gene3D - 361 508 IPR023299 GO:0000166
Vimu7g01352 925 FunFam ATPase 4 plasma membrane-type 594 833 - -
Vimu7g01352 925 Pfam E1-E2 ATPase 151 328 - -
Vimu7g01352 925 SMART Cation_ATPase_N_a_2 35 107 IPR004014 -
Vimu7g01352 925 CDD P-type_ATPase_H 54 859 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu7g01352 925 PRINTS H+-transporting ATPase (proton pump) signature 608 624 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01352 925 PRINTS H+-transporting ATPase (proton pump) signature 778 799 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01352 925 PRINTS H+-transporting ATPase (proton pump) signature 639 664 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01352 925 PRINTS H+-transporting ATPase (proton pump) signature 465 483 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01352 925 PRINTS H+-transporting ATPase (proton pump) signature 580 596 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01352 Vimu-Chr7 12884788 12891591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01352 26 925 Primary Pumps ATPases AT5G57350 83.298 0.0 1565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01352 K01535 - gmx:100816905 1665.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01352 7 12884788 12891591 Vimu10g00324 10 2213301 2220467 PCT