Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01348 ATGAGGTATATTCGGAGCAACAGTTTCAAGAGGTTCTTCTCCTTTGGAAGACGTAGTTCAAGGGAGCAAGTTCTGAGTCCTAACGGTGCAGAAAGTCACGAGACTCTTCCGTATAAAGAAGAACCTTTTGGAAGACCCTCTTGGAAGTGCTTCTCTTATGAGGATTTGTTTGATGCCACAAATGGCTTCAGCTCAGAAAATTTGGTTGGAAAGGGAGGGTATGCGGAAGTGTACAAGGGGACAATGAATGGGGGAGAAGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGACGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAATGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGCTATCTTCTAGAGGTTCTGTTGCATCTCTTCTTCACGCAAAATGGCTTCCATCTCAGTGGACTCATCATTCCATTGCCCCAATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCTTGCTGGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCACACCAAAGTTTACACAGCTGGGCCAAACCAATTTTGAACAAAGGTGGGATTGAAGAGTTGGTAGATCCAAGGCTTGAAGGGGCGTACGATGTGACACAGTTAAAAAGATTTTCCTTTGCTGCATCTCTCTGCATTCGGGCTTCTTCGACTTGGCGACCCACCATGACTGAGGTATTAGAGATAATGGAAGAGGGAGAAAGAGATATGGAAAAGTGGAAAATGGCAGAAGAAGAAGAGGAGGAAGAAGAAGAAGAAGAGTTCTGGGGATTTGAGGATCTGGAATATGAATACGATAGCTCATTTTCAATGTCATTACTTGATTCGATTGGAAGCACTGGTTAG 969 0.4407 MRYIRSNSFKRFFSFGRRSSREQVLSPNGAESHETLPYKEEPFGRPSWKCFSYEDLFDATNGFSSENLVGKGGYAEVYKGTMNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGGIEELVDPRLEGAYDVTQLKRFSFAASLCIRASSTWRPTMTEVLEIMEEGERDMEKWKMAEEEEEEEEEEEFWGFEDLEYEYDSSFSMSLLDSIGSTG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01348 322 ProSiteProfiles Protein kinase domain profile. 63 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01348 322 Coils Coil 271 291 - -
Vimu7g01348 322 Gene3D Phosphorylase Kinase; domain 1 37 138 - -
Vimu7g01348 322 FunFam Putative receptor-like serine/threonine-protein kinase 30 139 - -
Vimu7g01348 322 Gene3D Transferase(Phosphotransferase) domain 1 139 298 - -
Vimu7g01348 322 SUPERFAMILY Protein kinase-like (PK-like) 48 274 IPR011009 -
Vimu7g01348 322 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Vimu7g01348 322 Pfam Protein tyrosine and serine/threonine kinase 66 152 IPR001245 GO:0004672|GO:0006468
Vimu7g01348 322 PANTHER OS08G0249100 PROTEIN 151 303 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01348 Vimu-Chr7 12826947 12830399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01348 21 267 Trihelix Transcription Factor Family AT1G68690 32.484 1.16e-36 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu7g01348 PK_Tyr_Ser-Thr 3.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01348 - - gmx:100819499 450.669