LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g01344	ATGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCTCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGCATGAAACTGCGACAGACCCTGAACCACATTCTTCGTCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCATTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATGGTAGTGATTCTGTTCATATTACATACTGCAAGAACTCAGCCTGCAAAGCTACCCTGAATCAAGCAGATGCATTTTGTAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGATAACAAAGACCCTAGCCTGTGGTTAGTATGTAGTTCTGAGAATCCATTTCCCGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTGAAACATGATGGTTCTGGAATTGGCAAAGATGGGGATCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGGTAA	684	0.4137	MGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHETATDPEPHSSSASGQKPAKRQRKSENPSHLPVPVTSISVNNGSDSVHITYCKNSACKATLNQADAFCKRCSCCICHQYDDNKDPSLWLVCSSENPFPGVSCGLSCHLECALKHDGSGIGKDGDRPKLDGGFYCVACGKVNDLLG	227

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g01344	227	PANTHER	VIN3-LIKE PROTEIN 2-RELATED	3	227	IPR044514	GO:0010048\|GO:0040029
	Vimu7g01344	227	Pfam	PHD - plant homeodomain finger protein	134	227	IPR032881	-
	Vimu7g01344	227	CDD	PHD_VIN3_plant	154	219	-	-
	Vimu7g01344	227	MobiDBLite	consensus disorder prediction	78	120	-	-
	Vimu7g01344	227	MobiDBLite	consensus disorder prediction	86	100	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g01344	Vimu-Chr7	12797759	12800387	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g01344	2	226	PHD Gene Family	AT4G30200	60.166	3.00e-78	245

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g01344	-		-	gmx:100819331	444.506

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