Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01343 ATGGACTCTTCTTCTTCATCACCGCCAAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCTTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCACCTCTTATCCATCTCTCACCCTCACAGGCAGTAACACGGTGGATGCATCACCGGAGGCACCAGGCCGCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTTGAGGACTTTCTTGGCAGTTCCGCCACACCAGACACCACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCACTGACAACAACCTATATGAATCGGAGCTCAAGACAACAATAGCCGCGTGCTTTCCTCGCGGCTTCGCCGTCGAAGCAAGCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTGGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACCCGGCACAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGGGGAGATGAAGAACATGACGAGGCAGGAGTTTGTTGCTTCTCTTCGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCCGAGGCCTACGACATTGCAGCTATAAAATTCAGGGGGTTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAAAGCATTGCAAACAGCACACTTCCCATTGGGGGTTTGTCTAGCAAGAACAAGACATCCGGGGATTCTGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCGGACGAACGAGATCTGTCATCGGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCACAATCCTACTCTCGACAACAGTGGGGTCAGAAACACTGCTAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAATACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCATCAAAGTGGTAATGGTAATGGGAATGGTAATGGTCATGGTCATGGAAATGGAAGCAGCGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACTCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCAATATTTGGCATGGAATGA 1557 0.508 MDSSSSSPPNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFTSYPSLTLTGSNTVDASPEAPGRGGATNLSIFTAAPKFEDFLGSSATPDTTATGAPPQLPQFSTDNNLYESELKTTIAACFPRGFAVEASTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKTSGDSASESKSHEASRSDERDLSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTASVTTTSPFQMDLSSAPSNTGSENNAAFFSGGGIFVQHQSGNGNGNGNGHGHGNGSSGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01343 518 MobiDBLite consensus disorder prediction 353 373 - -
Vimu7g01343 518 SUPERFAMILY DNA-binding domain 249 310 IPR016177 GO:0003677
Vimu7g01343 518 MobiDBLite consensus disorder prediction 337 352 - -
Vimu7g01343 518 ProSiteProfiles AP2/ERF domain profile. 250 308 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 FunFam AP2-like ethylene-responsive transcription factor 249 310 - -
Vimu7g01343 518 MobiDBLite consensus disorder prediction 323 373 - -
Vimu7g01343 518 CDD AP2 150 216 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 MobiDBLite consensus disorder prediction 82 101 - -
Vimu7g01343 518 MobiDBLite consensus disorder prediction 444 463 - -
Vimu7g01343 518 CDD AP2 249 310 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 397 - -
Vimu7g01343 518 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 PRINTS Ethylene responsive element binding protein signature 290 310 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 MobiDBLite consensus disorder prediction 84 101 - -
Vimu7g01343 518 MobiDBLite consensus disorder prediction 1 33 - -
Vimu7g01343 518 Gene3D AP2/ERF domain 250 310 IPR036955 GO:0003700|GO:0006355
Vimu7g01343 518 Gene3D AP2/ERF domain 151 216 IPR036955 GO:0003700|GO:0006355
Vimu7g01343 518 ProSiteProfiles AP2/ERF domain profile. 151 214 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 SUPERFAMILY DNA-binding domain 150 216 IPR016177 GO:0003677
Vimu7g01343 518 SMART rav1_2 250 314 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 SMART rav1_2 151 220 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 FunFam AP2-like ethylene-responsive transcription factor ANT 150 216 - -
Vimu7g01343 518 Pfam AP2 domain 250 300 IPR001471 GO:0003700|GO:0006355
Vimu7g01343 518 Pfam AP2 domain 151 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01343 Vimu-Chr7 12770588 12774035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01343 96 518 AP2-EREBP Transcription Factor Family AT5G57390 54.911 1.83e-137 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu7g01343 AP2 6.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01343 K09285 - gmx:100797828 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01343 7 12770588 12774035 Vimu7g01343 7 12770588 12774035 ECH