Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu7g01343 | ATGGACTCTTCTTCTTCATCACCGCCAAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCTTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCACCTCTTATCCATCTCTCACCCTCACAGGCAGTAACACGGTGGATGCATCACCGGAGGCACCAGGCCGCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTTGAGGACTTTCTTGGCAGTTCCGCCACACCAGACACCACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCACTGACAACAACCTATATGAATCGGAGCTCAAGACAACAATAGCCGCGTGCTTTCCTCGCGGCTTCGCCGTCGAAGCAAGCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTGGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACCCGGCACAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGGGGAGATGAAGAACATGACGAGGCAGGAGTTTGTTGCTTCTCTTCGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCCGAGGCCTACGACATTGCAGCTATAAAATTCAGGGGGTTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAAAGCATTGCAAACAGCACACTTCCCATTGGGGGTTTGTCTAGCAAGAACAAGACATCCGGGGATTCTGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCGGACGAACGAGATCTGTCATCGGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCACAATCCTACTCTCGACAACAGTGGGGTCAGAAACACTGCTAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAATACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCATCAAAGTGGTAATGGTAATGGGAATGGTAATGGTCATGGTCATGGAAATGGAAGCAGCGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACTCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCAATATTTGGCATGGAATGA | 1557 | 0.508 | MDSSSSSPPNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFTSYPSLTLTGSNTVDASPEAPGRGGATNLSIFTAAPKFEDFLGSSATPDTTATGAPPQLPQFSTDNNLYESELKTTIAACFPRGFAVEASTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKTSGDSASESKSHEASRSDERDLSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTASVTTTSPFQMDLSSAPSNTGSENNAAFFSGGGIFVQHQSGNGNGNGNGHGHGNGSSGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME | 518 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu7g01343 | 518 | MobiDBLite | consensus disorder prediction | 353 | 373 | - | - | |
Vimu7g01343 | 518 | SUPERFAMILY | DNA-binding domain | 249 | 310 | IPR016177 | GO:0003677 | |
Vimu7g01343 | 518 | MobiDBLite | consensus disorder prediction | 337 | 352 | - | - | |
Vimu7g01343 | 518 | ProSiteProfiles | AP2/ERF domain profile. | 250 | 308 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | FunFam | AP2-like ethylene-responsive transcription factor | 249 | 310 | - | - | |
Vimu7g01343 | 518 | MobiDBLite | consensus disorder prediction | 323 | 373 | - | - | |
Vimu7g01343 | 518 | CDD | AP2 | 150 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | MobiDBLite | consensus disorder prediction | 82 | 101 | - | - | |
Vimu7g01343 | 518 | MobiDBLite | consensus disorder prediction | 444 | 463 | - | - | |
Vimu7g01343 | 518 | CDD | AP2 | 249 | 310 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 76 | 397 | - | - | |
Vimu7g01343 | 518 | PRINTS | Ethylene responsive element binding protein signature | 152 | 163 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | PRINTS | Ethylene responsive element binding protein signature | 290 | 310 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | MobiDBLite | consensus disorder prediction | 84 | 101 | - | - | |
Vimu7g01343 | 518 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Vimu7g01343 | 518 | Gene3D | AP2/ERF domain | 250 | 310 | IPR036955 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | Gene3D | AP2/ERF domain | 151 | 216 | IPR036955 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | ProSiteProfiles | AP2/ERF domain profile. | 151 | 214 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | SUPERFAMILY | DNA-binding domain | 150 | 216 | IPR016177 | GO:0003677 | |
Vimu7g01343 | 518 | SMART | rav1_2 | 250 | 314 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | SMART | rav1_2 | 151 | 220 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 150 | 216 | - | - | |
Vimu7g01343 | 518 | Pfam | AP2 domain | 250 | 300 | IPR001471 | GO:0003700|GO:0006355 | |
Vimu7g01343 | 518 | Pfam | AP2 domain | 151 | 206 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu7g01343 | Vimu-Chr7 | 12770588 | 12774035 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu7g01343 | 96 | 518 | AP2-EREBP Transcription Factor Family | AT5G57390 | 54.911 | 1.83e-137 | 403 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Vimu7g01343 | AP2 | 6.3e-09 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu7g01343 | K09285 | - | gmx:100797828 | 823.928 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu7g01343 | 7 | 12770588 | 12774035 | Vimu7g01343 | 7 | 12770588 | 12774035 | ECH |