Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01342 ATGTATTCGAATTCGAGCCAGTTCGACGGCAACGCAGCCTTCTCTGGAGGCGGATTTATGCCTTCTCAAGCCACTCAGGCCACTGATCCTTCATTGGTTACCTCCAAGAATCGGGATGCTCAGTCCTTGCTTCCTCTAACAGTGAAGCAAATATACGATGCGCTTCAGACAAATGATGATAAAGCCAATTTGATTGTTGACGGTGTGGACATTAATAATGTTACTCTTATAGGAAGGGTGTGCAACAAAGCCGAACGAGTTACTGATGTTACTTTTGTGCTTGATGATGGTACTGGGAAGATTGAGTGTAATAAATGGTTTCATGAAGCTGCTGATACAAATGAAGCAGAGGCTATCTTGGAAGGAATGTATGCGAGGCTCCATGGACACTTGAAAAACTTCCAGGGTAAAAGGACCTTAAATATTTTCCATTTCAGGCCTGTGACTGACTTTAACGAGGTTGCGAGTCATTTCATAGATTGCATACATGTGCATCTCCACAATTCCAGGATTCGGAATAGTGTCCTTAATCAGCAACCTGGTATGAATTCTGCGCCAATTACTCCCACAATGGGTTATCAAGCTCAAGTTTTTCCACCAACAAATCACTTCTCCGATCAACATGTCAATGGCCAGAAGAGTGCTGAAAATATGATCTTAGATTTTCTGCATCTTCCCGCCAACAGGTCAAGGAATGAGGGAGTCCATCGTGATCATATTGCACAGCATCTTCAGATTTCTTTAGAGAAGCTCATGCTGGCTATGAAAAGTCTTATCGATGAAGGTGCCGTTTATGAAACCATAGCTGATCACTATAAATCAATCATCAATGGTTGA 837 0.4241 MYSNSSQFDGNAAFSGGGFMPSQATQATDPSLVTSKNRDAQSLLPLTVKQIYDALQTNDDKANLIVDGVDINNVTLIGRVCNKAERVTDVTFVLDDGTGKIECNKWFHEAADTNEAEAILEGMYARLHGHLKNFQGKRTLNIFHFRPVTDFNEVASHFIDCIHVHLHNSRIRNSVLNQQPGMNSAPITPTMGYQAQVFPPTNHFSDQHVNGQKSAENMILDFLHLPANRSRNEGVHRDHIAQHLQISLEKLMLAMKSLIDEGAVYETIADHYKSIING 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01342 278 Gene3D - 35 170 IPR012340 -
Vimu7g01342 278 Pfam OB-fold nucleic acid binding domain 74 142 IPR004365 GO:0003676
Vimu7g01342 278 Gene3D - 206 276 IPR036388 -
Vimu7g01342 278 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu7g01342 278 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Vimu7g01342 278 SUPERFAMILY "Winged helix" DNA-binding domain 210 275 IPR036390 -
Vimu7g01342 278 PANTHER REPLICATION PROTEIN A-RELATED 7 275 IPR040260 -
Vimu7g01342 278 Pfam Replication protein A C terminal 165 270 IPR014892 -
Vimu7g01342 278 CDD RPA2_DBD_D 73 166 - -
Vimu7g01342 278 FunFam Replication protein A 32 kDa subunit 207 276 - -
Vimu7g01342 278 FunFam replication protein A 32 kDa subunit A-like 36 170 - -
Vimu7g01342 278 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01342 Vimu-Chr7 12756932 12761783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01342 1 275 Core DNA Replication Machinery Family AT2G24490 44.604 2.43e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01342 K10739 - gmx:100782819 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01342 7 12756932 12761783 Vimu7g01342 7 12756932 12761783 ECH