LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g01316	ATGGAACAACAACAATCTACACAGCACCACAACCATGACTTCATCTTCCGTTCCAAACTCCCCGACATTTACATTCCCACGCACCTCCCTCTCCACACTTACATCTTCCAAAACCTCTCCCAGTTCAACCATCGACCCTGCCTCATTAACGCCGCCACCGGAGACTGCTTCACCTACGCCGACGTCCACCTCACCGCTCGCAGAGTCGCCGCCGGCCTCAACAAACTAGGCATCCAACACGGTGACGTCATCCTCCTTCTCCTCCCGAACTGCCCCCAGTTCGTCTTCGCATTCCTGGGCTCCTCCTTCTGCGGCGCCACCATCACCACCGCTAACCCCTTCTACACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCCTCCAACGCCAAACTCATCATAACGCAGGCGTCCTACGTGGACAAAGTGAAGGATTTCGCGAGCGAAAACGACGTCAGAGTGATGTGCATTGACGGGGCGCCGGAAGGTTACCTTCACTTCTCGGAGTTAACGAAGGCAAACGAGAATGACATTCCGGGCGTCAAAATATCCCCAGATGACGTGGTTGCGCTGCCGTATTCTTCTGGAACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGGGCTGATTACAAGCGTGGCGCAACAAGTGGACGGAGAGAACCCTAATCTGTATATACGCAGCGAAGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATTTATTCCCTCAACACCATTTTGCTCTGTTCCCTTCGTGTTGGGGCTGCAGTTTTGATAATGCCCAAATTCGATATAGTAAAATTGATGCAGCTGGTGGAGAAACACAAGGTGAGCGTGGCACCGTTTGTGCCACCCATCATTTTGGCGATTGCCAAAAGTCCAGATTTGCAGCGTTACGACCTGTCGTCGATTCGACTGATTATGTCTGGCGCCGCTCCTGTGGGAAAGGAACTTGAGGATTCTGTCAGGGCCAAACTTCCCAACGCCATTCTTGGACAGGGTTATGGGATGACAGAAGCAGGACCAGTGCTTTCAATGTGCTTAGCGTTTGCGAAGGAAGCAGGGCATGTGAAATCAGGTTCGTGCGGGACCGTTGTAAGAAATGCAGAGATGAAGATCGTTGACCCTCTCACTGCTGCTTCGCTTCACACAAATCAAGCTGGTGAGATTTGTATCAGAGGCAACCAGATCATGAAAGGTTACCTAAATGATGAAGAAGCCACAAAAATAACTATAGACGAAGAAGGATGGTTGCATACGGGTGATATTGGATACATCGACGATGATGACCAGATTTTCATCGTTGATCGGTTGAAGGAGTTGATAAAATACAAAGGATTTCAAGTTGCTCCTGCTGAGCTCGAAGCCATGCTAATTGTGCACCCAAAGATTTCTGATGCTGCCGTTGTGTCCATGAAGGATGAAGCTGCAGGAGAGGTTCCGGTTGCATTTGTTGTACTATCTAATGGTTCAAAAATCTCTGAGGAAGAAATCAAGCAGTACATCTCAAAGCAGGTTGTGTTCTACAAAAGAATCAGTAGAGTTTTCTTTGTAAGTTCAATTCCGAAGGCAGCCTCTGGAAAGATCTTGCGAAGAGAACTGAGGGCAAGGCTTGCAAATGGTATTCCTTCATTGTGA	1644	0.4982	MEQQQSTQHHNHDFIFRSKLPDIYIPTHLPLHTYIFQNLSQFNHRPCLINAATGDCFTYADVHLTARRVAAGLNKLGIQHGDVILLLLPNCPQFVFAFLGSSFCGATITTANPFYTPAEVAKQAAASNAKLIITQASYVDKVKDFASENDVRVMCIDGAPEGYLHFSELTKANENDIPGVKISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGENPNLYIRSEDVVLCVLPLFHIYSLNTILLCSLRVGAAVLIMPKFDIVKLMQLVEKHKVSVAPFVPPIILAIAKSPDLQRYDLSSIRLIMSGAAPVGKELEDSVRAKLPNAILGQGYGMTEAGPVLSMCLAFAKEAGHVKSGSCGTVVRNAEMKIVDPLTAASLHTNQAGEICIRGNQIMKGYLNDEEATKITIDEEGWLHTGDIGYIDDDDQIFIVDRLKELIKYKGFQVAPAELEAMLIVHPKISDAAVVSMKDEAAGEVPVAFVVLSNGSKISEEEIKQYISKQVVFYKRISRVFFVSSIPKAASGKILRRELRARLANGIPSL	547

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu7g01316	547	FunFam	4-coumarate--CoA ligase 2	442	543	-	-
Vimu7g01316	547	Pfam	AMP-binding enzyme C-terminal domain	455	530	IPR025110	-
Vimu7g01316	547	Pfam	AMP-binding enzyme	38	446	IPR000873	-
Vimu7g01316	547	Gene3D	-	441	543	IPR045851	-
Vimu7g01316	547	FunFam	Long-chain-fatty-acid--CoA ligase FadD	17	441	-	-
Vimu7g01316	547	SUPERFAMILY	Acetyl-CoA synthetase-like	11	543	-	-
Vimu7g01316	547	CDD	4CL	25	536	-	-
Vimu7g01316	547	ProSitePatterns	Putative AMP-binding domain signature.	190	201	IPR020845	-
Vimu7g01316	547	PANTHER	LONG-CHAIN-FATTY-ACID--COA LIGASE	12	538	-	-
Vimu7g01316	547	Gene3D	-	6	440	IPR042099	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g01316	Vimu-Chr7	12552485	12557583	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g01316	1	508	Monolignol Biosynthesis Gene Families	AT1G51680	68.798	0.0	715

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g01316	K01904		-	gmx:100779668	897.886

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g01316	7	12552485	12557583	Vimu7g01316	7	12552485	12557583	ECH

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