Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01316 ATGGAACAACAACAATCTACACAGCACCACAACCATGACTTCATCTTCCGTTCCAAACTCCCCGACATTTACATTCCCACGCACCTCCCTCTCCACACTTACATCTTCCAAAACCTCTCCCAGTTCAACCATCGACCCTGCCTCATTAACGCCGCCACCGGAGACTGCTTCACCTACGCCGACGTCCACCTCACCGCTCGCAGAGTCGCCGCCGGCCTCAACAAACTAGGCATCCAACACGGTGACGTCATCCTCCTTCTCCTCCCGAACTGCCCCCAGTTCGTCTTCGCATTCCTGGGCTCCTCCTTCTGCGGCGCCACCATCACCACCGCTAACCCCTTCTACACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCCTCCAACGCCAAACTCATCATAACGCAGGCGTCCTACGTGGACAAAGTGAAGGATTTCGCGAGCGAAAACGACGTCAGAGTGATGTGCATTGACGGGGCGCCGGAAGGTTACCTTCACTTCTCGGAGTTAACGAAGGCAAACGAGAATGACATTCCGGGCGTCAAAATATCCCCAGATGACGTGGTTGCGCTGCCGTATTCTTCTGGAACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGGGCTGATTACAAGCGTGGCGCAACAAGTGGACGGAGAGAACCCTAATCTGTATATACGCAGCGAAGACGTGGTGTTGTGCGTGCTTCCACTTTTCCATATTTATTCCCTCAACACCATTTTGCTCTGTTCCCTTCGTGTTGGGGCTGCAGTTTTGATAATGCCCAAATTCGATATAGTAAAATTGATGCAGCTGGTGGAGAAACACAAGGTGAGCGTGGCACCGTTTGTGCCACCCATCATTTTGGCGATTGCCAAAAGTCCAGATTTGCAGCGTTACGACCTGTCGTCGATTCGACTGATTATGTCTGGCGCCGCTCCTGTGGGAAAGGAACTTGAGGATTCTGTCAGGGCCAAACTTCCCAACGCCATTCTTGGACAGGGTTATGGGATGACAGAAGCAGGACCAGTGCTTTCAATGTGCTTAGCGTTTGCGAAGGAAGCAGGGCATGTGAAATCAGGTTCGTGCGGGACCGTTGTAAGAAATGCAGAGATGAAGATCGTTGACCCTCTCACTGCTGCTTCGCTTCACACAAATCAAGCTGGTGAGATTTGTATCAGAGGCAACCAGATCATGAAAGGTTACCTAAATGATGAAGAAGCCACAAAAATAACTATAGACGAAGAAGGATGGTTGCATACGGGTGATATTGGATACATCGACGATGATGACCAGATTTTCATCGTTGATCGGTTGAAGGAGTTGATAAAATACAAAGGATTTCAAGTTGCTCCTGCTGAGCTCGAAGCCATGCTAATTGTGCACCCAAAGATTTCTGATGCTGCCGTTGTGTCCATGAAGGATGAAGCTGCAGGAGAGGTTCCGGTTGCATTTGTTGTACTATCTAATGGTTCAAAAATCTCTGAGGAAGAAATCAAGCAGTACATCTCAAAGCAGGTTGTGTTCTACAAAAGAATCAGTAGAGTTTTCTTTGTAAGTTCAATTCCGAAGGCAGCCTCTGGAAAGATCTTGCGAAGAGAACTGAGGGCAAGGCTTGCAAATGGTATTCCTTCATTGTGA 1644 0.4982 MEQQQSTQHHNHDFIFRSKLPDIYIPTHLPLHTYIFQNLSQFNHRPCLINAATGDCFTYADVHLTARRVAAGLNKLGIQHGDVILLLLPNCPQFVFAFLGSSFCGATITTANPFYTPAEVAKQAAASNAKLIITQASYVDKVKDFASENDVRVMCIDGAPEGYLHFSELTKANENDIPGVKISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGENPNLYIRSEDVVLCVLPLFHIYSLNTILLCSLRVGAAVLIMPKFDIVKLMQLVEKHKVSVAPFVPPIILAIAKSPDLQRYDLSSIRLIMSGAAPVGKELEDSVRAKLPNAILGQGYGMTEAGPVLSMCLAFAKEAGHVKSGSCGTVVRNAEMKIVDPLTAASLHTNQAGEICIRGNQIMKGYLNDEEATKITIDEEGWLHTGDIGYIDDDDQIFIVDRLKELIKYKGFQVAPAELEAMLIVHPKISDAAVVSMKDEAAGEVPVAFVVLSNGSKISEEEIKQYISKQVVFYKRISRVFFVSSIPKAASGKILRRELRARLANGIPSL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01316 547 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Vimu7g01316 547 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Vimu7g01316 547 Pfam AMP-binding enzyme 38 446 IPR000873 -
Vimu7g01316 547 Gene3D - 441 543 IPR045851 -
Vimu7g01316 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Vimu7g01316 547 SUPERFAMILY Acetyl-CoA synthetase-like 11 543 - -
Vimu7g01316 547 CDD 4CL 25 536 - -
Vimu7g01316 547 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Vimu7g01316 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 538 - -
Vimu7g01316 547 Gene3D - 6 440 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01316 Vimu-Chr7 12552485 12557583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01316 1 508 Monolignol Biosynthesis Gene Families AT1G51680 68.798 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01316 K01904 - gmx:100779668 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01316 7 12552485 12557583 Vimu7g01316 7 12552485 12557583 ECH