Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01315 ATGGAACAACAACAATCTACACAGCACCAAAACCATGACTTCATTTTCCGTTCCAAACTCCCCGACATTTACATTCCCACGCACCTCCCTCTCCACGCTTACATCTTCCAAAACATCTCCCAATTCAACCACCGACCCTGCCTCATCAACGCCGCCACCGGAGAATGCTTCACCTATGCCCACGTCCAACTCACCGCTCGCAGAGTCGCCGCCGGCCTCAACAAACTCGGCATCCAGCACGGCGACGTCATCCTCCTTCTCCTCCGGAACTGCCCCCAGTTCGTCTTCGCATTCCTGGGCTCCTCCCTCTGCGGCGCCACCATCACCACCGCTAACCCCTTCTACACTCCGGCGGAGGTGGCCAAGCAAGCCGCGGCCTCCAACGCCAAACTCATCATAACGCAGGCGTCCTACGTAGACAAAGTGAAGGATTTCGCGAGCGAAAACGACGTCAGAGTGATGTGCGTTGACGGGGCGCCGGAAGGTTACCTTCACTTCTCGGAGTTGACGGAGGCAAACGAGAAAGACATTCCCGGCGTTAAAATATCCCCGGACGATGTGGTTGCGCTTCCGTATTCTTCAGGAACGACGGGGATTCCGAAGGGAGTGATGCTAACGCACAAGGGGATGGTTACGAGCGTGGCGCAGCAAGTGGACGGAGAGAACCCAAATGTGTATATGCGGAGCGAGGACGTGGTGTTGAGCGTGCTTCCACTTTTCCATATTTATGCTCTCAACAGTGTTTTGCTCTGTTCTCTTCGAGTTGGGGCTACCGTTTTGATAATGCCAGAATTTGATATCGTTAAGTTGATAGAGTTAGTTGAGAAACACAGGGTAAGCGTGGCGGCTTTTGTGCCGCCCATCGTATTGGCGATTGCGAAGTGTCGAGATTTGCAGCGATACGACCTGTCGTCGATTCGAATGATTATATGTGGTGCAGCACCCGTGGGAGAGGAACTTGAGAATTGTATGCGGGCGAAACTACCCAACGCCATATTTGGTCAGGGTTACGGGATGACAGAGGCGTTAGCTATTTCATTCTGCTTATCCTTTGCGAAGGAAGCAGTGGAAATGAAATCAGGTTCGAGCGGGAGCGTGGTAAGAAACGCGGAGATAAAGATCGTTCACCCTCACTCTGGTGCTTCGCTCCGTAGGAATAAACCAGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTGAACGACGAAGAGGCAACAAAAAATACAATAGATGAGGAGGGATGGTTGCATACGGGTGATATTGGGTACATGGATGATGATGATGAACTTTTCATCGTTGATCGATTGAAGGAGTTGATCAAATACAAAGGATTTCAAGTCGCTCCAGCGGACATGAAGGATGAAGTTGCAGGAGAAGTTCCAGTGGCGTTTGTTGTGAGATCAAAAGGTTCTAATATATCTGAGCAAGAAATCAAGCAATACATCTCAAACCAGGTTGTGTTTTATAAAAGAATCAGCAAGGTTTTCTTTGTGGGCTCTATTCCAAAGTCTGCCTCTGGAAAGATCTTGCGAAGAGAAATAATGGCAAGGCTTTGA 1566 0.4994 MEQQQSTQHQNHDFIFRSKLPDIYIPTHLPLHAYIFQNISQFNHRPCLINAATGECFTYAHVQLTARRVAAGLNKLGIQHGDVILLLLRNCPQFVFAFLGSSLCGATITTANPFYTPAEVAKQAAASNAKLIITQASYVDKVKDFASENDVRVMCVDGAPEGYLHFSELTEANEKDIPGVKISPDDVVALPYSSGTTGIPKGVMLTHKGMVTSVAQQVDGENPNVYMRSEDVVLSVLPLFHIYALNSVLLCSLRVGATVLIMPEFDIVKLIELVEKHRVSVAAFVPPIVLAIAKCRDLQRYDLSSIRMIICGAAPVGEELENCMRAKLPNAIFGQGYGMTEALAISFCLSFAKEAVEMKSGSSGSVVRNAEIKIVHPHSGASLRRNKPGEICIRGNQIMKGYLNDEEATKNTIDEEGWLHTGDIGYMDDDDELFIVDRLKELIKYKGFQVAPADMKDEVAGEVPVAFVVRSKGSNISEQEIKQYISNQVVFYKRISKVFFVGSIPKSASGKILRREIMARL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01315 521 Pfam AMP-binding enzyme 38 445 IPR000873 -
Vimu7g01315 521 Gene3D - 454 521 IPR045851 -
Vimu7g01315 521 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 440 - -
Vimu7g01315 521 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 517 - -
Vimu7g01315 521 SUPERFAMILY Acetyl-CoA synthetase-like 10 520 - -
Vimu7g01315 521 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Vimu7g01315 521 Pfam AMP-binding enzyme C-terminal domain 456 511 IPR025110 -
Vimu7g01315 521 CDD 4CL 25 516 - -
Vimu7g01315 521 Gene3D - 6 439 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01315 Vimu-Chr7 12540925 12547256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01315 1 489 Monolignol Biosynthesis Gene Families AT1G51680 61.822 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01315 K01904 - gmx:100779668 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01315 7 12540925 12547256 Vimu7g01315 7 12540925 12547256 ECH