Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01312 ATGGCCATGAATTTCCATCCCAATACTTCTCTTCACCTTAGCCAATCGGATGATGAGATCAATCACCTCAATCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCATCTTCTCCCTCACCTATAAGTCCCATTGAGCCCCGGATATTCTCATGCAACTATTGCCAGAGAAAATTTTATAGCTCTCAAGCGCTAGGGGGTCACCAAAATGCTCACAAGCTTGAGAGGACTCTAGCCAAGAAAAGCAGGGAAATGAGTTCAACCATGCAGTCTTACGGAGCACCGGAGCAAAGATCAAACTTCAGTCCTTCACACCATCTTGGTCGTGCTCTTGGGGTTAACGTTGTGGATAACCAAGGACAAAGCTATGTGAGGCTCGGCGGAAGAAAAGAATACAGCTATGGAACCAAGGAAGGGGTGGCTTCCTGGTCAAGGGGTTATGCTTCTGAGCATGTTCAGGAGGATATTGGCCAACTTGACTTGTCCTTGAGGCTTTGA 498 0.4639 MAMNFHPNTSLHLSQSDDEINHLNLDLLLEPSSSSSSSPSPISPIEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSREMSSTMQSYGAPEQRSNFSPSHHLGRALGVNVVDNQGQSYVRLGGRKEYSYGTKEGVASWSRGYASEHVQEDIGQLDLSLRL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01312 165 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Vimu7g01312 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Vimu7g01312 165 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 112 IPR044246 GO:0009788
Vimu7g01312 165 FunFam Zinc finger protein 2 29 97 - -
Vimu7g01312 165 Gene3D Classic Zinc Finger 41 105 - -
Vimu7g01312 165 SUPERFAMILY beta-beta-alpha zinc fingers 47 77 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01312 Vimu-Chr7 12518699 12519196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01312 3 85 C2H2 Transcription Factor Family AT5G57520 67.816 6.56e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g01312 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01312 - - vra:106768043 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01312 7 12518699 12519196 Vimu7g01312 7 12518699 12519196 ECH