Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01301 ATGTGTAATAAAGGGTTTCAATGCTTGAACGAGTGTGAGAGTGAAGTTGATCAAAGGCAAGAATTCTTCGTCATGGATAGTCCAATTCGATCGCCAGCTGCCGGTTCAGGCTCCGGCGAAGAAAGCCGGCGTGTTAAGTTTTTGTGCAGCTTTCTGGGGAGCATAATGCCCCGTCCCCAAGATGGGAAGCTGCGTTACGTCGGTGGCGAGACACGAATTGTGAGTGTTTGTAGAGATATTAGCTACGAGGAGTTGATGGTGAAGATGAGAGAGTTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAGCCCGACGAGGATCTTGATGCTCTTGTTTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAAGAGTATGACAAGTTGGGGTCAGGGGATGGATTCACTAGGCTCAGGATATTTTTGTTTTCACAATCCGAACAGGATGGTTCCTCACATTTCATTGATGGGGATGATTCTGAGAGAAGGTATGTTGATGCATTGAATAGTTTAAATGATGTTGCTGACTTTAGGAGGTTGCAACAAGGAGAGTTTCCAATGATTAGCCCTGTTGAGGATATCCATGTGGCTGGTGAACAGTTTTTCAATCCAATGAGTGTGGAAAGTGGGATTCATTCTCACAGAAGTGGGGACCTATCTATGCCACCTTATAACATGCATCATCTCTCGATCCAGCACCCGCAAACCGTGGGCCCAAGGTATACTGAAATGGATTCTCCTTGGAATCCTGCTTATTACTCTCCTAGGCACCATGGTCTCCACGACACCAGATCATTAGTTGAATTTCCATCTTCGCCGTCTGGTAGGTACCGAATGCCATTTCCAGAGTTACCAGATAAGTGCATTGATCGAGGGCCGGAAGACTATGCTCGACATCATGTAAACCACCATCCTTTGTATGAAAATCAGCAGCAGTATGCTGATAATGTTTTGTGGGTGCCGACAGGAGCAGCACATTCTGAAAAGACAGGTTTTCCAGGCAGTATTCTTCATGGTTCCCATGTTGTTGATGGGAACAACATATGTGAGCAGTGTCGCATGGGTTTTCAGAGAGGTCAACCGCATCTGGAACATTCTAATATAAGTAATGGACTTCTACCGGTTGCTAATCCATGTGGAGAATGCCCCCTGCCAAATAGGGATGCTTTCCCCATGAATGTTGATGCAAAGTTACATCCAGCAATGTATCCCAATGAACCTAATGGTGATCACAGGTCTGTTTATAATGATACTCAAAATCATGAGAGAGGTTGGGGTTTGCAGCATCCAACAACTGCTCGGGTTGAGGAATCAAGAGGACATTTATCTGTATCAGGAAGAGTGGGTGATGTTCCAGTTGCAAATATCTCTCTTGGGCATGGTAGTGTGACTGATGGACATGCCCTGTCGTCCAATTATCTCCATCAGCCGGTTGGACCTGAATTGGGTACTGAACTTTTCCCTGACCAAACCCTGACTGCATCACCACACGTACAAATTGCTCCACTTGAAGAATGCAATGTGCGGTACGGAAATCCATCTCCTCCTTATGGAGTAGACAGTAATTATGCTGTGCCCCGTGGGCATCCATCTGGTTTATGGAGGAATACTCCAATTCCTGTTCATTTGGGACCATCTTATGAGGCAAATACCTCACCTCCGCAAGTGAATGGTATGATAAATGCGGCATTAGTCAGGGGAGAAGGCAGTCCAGGGTTTTACGTTGGACCAGATACTCAAAATCAATGGGTTGATTCCTCACAGAAATTGACAGGACATGATTGTAAAGCCATCCCAGAATATTCGCATGCACATGCACTGCAGTTGAATCCAACACTCCTTGGTCCAGAGAATCAGCACCCAGTTACTGTAGATACCGTTCACCCTCCACAGGACGTGAGTACTGGTACCTGCTTGGAACCTTTGCAGGTTCCAATATCACCTTATAATATGGTTCATAATCAGGAGGTTTTAAGAAATGACACCCATTTGGCTACAGCAAAGACTTTCGAATCAAATACTTTGCTTGGAGAAGGAATAGTGGTAAAAATTGAGGACAAGGTTCAAGGCCCTGACACGCAGACTGTATCTTATTCAGAGCAAAATAAAGTTGCTGGGAATGCATGTCCAGCTGCTGCTTCTGTTGATTCTAATAATTCAAAGTCTAAACCTGAAGGAGACTGCAGGCATGTTGAGAAACTGGCTGATGAGGACCATTCTGTTCCACAAGATTATAAGCATTTAGGTAATCAATTAAGCCTCTTGCCTGCGTTGATTGCTTCTGTGAAAAGGGATGCATTCGAAGTTGCTGAAGAGGTGAAAACTGCTGCTAAGGATGGCCCAGCCAATTCTCATAATCAAAATTTAGACGCCAAGGAAAAGACAATAAATGAAGTAGAGCCAGCGAATGCTAATGGTGATTTAGAATTGAACTCTGAAAGTGACCATGTAGATACTTCTAAAATTGAGCCTACGAAGGCTGAGGAAGAAGCAATTGCCAGGGGATTGCAGACTATTAAAAATGATGATTTGGAGGAGATCCGCGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGTTCTGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATTACAGATTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCTGACAGTTCTTTAGCAACAGTCACAGAATTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATTGATCGTCGTAAGAGACTCATTATAGCCATGGATGCTGCATTTGGGATGGAATATTTGCATGGAAAAAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCTCAACGCCCTGTCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGTGGAACTTTGCCATGGATGGCACCTGAGCTTCTTAGTGGGAAAAGCAATATGGTATCGGAGAAGATTGATGTCTACTCATTCGGAGTAGTTATGTGGGAGTTGCTCACAGGGGATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGTATCGTGAACAACAGTTTACGTCCTCAAATCCCATCATGGTGTGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCATCTGATCCTGCAGAAAGACCATCATTTTCAGAAATTTCCAAGAAGTTAAGGAGTATGGCTGCTTCAATGAATGTGAAATAG 3357 0.4376 MCNKGFQCLNECESEVDQRQEFFVMDSPIRSPAAGSGSGEESRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVCRDISYEELMVKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDVADFRRLQQGEFPMISPVEDIHVAGEQFFNPMSVESGIHSHRSGDLSMPPYNMHHLSIQHPQTVGPRYTEMDSPWNPAYYSPRHHGLHDTRSLVEFPSSPSGRYRMPFPELPDKCIDRGPEDYARHHVNHHPLYENQQQYADNVLWVPTGAAHSEKTGFPGSILHGSHVVDGNNICEQCRMGFQRGQPHLEHSNISNGLLPVANPCGECPLPNRDAFPMNVDAKLHPAMYPNEPNGDHRSVYNDTQNHERGWGLQHPTTARVEESRGHLSVSGRVGDVPVANISLGHGSVTDGHALSSNYLHQPVGPELGTELFPDQTLTASPHVQIAPLEECNVRYGNPSPPYGVDSNYAVPRGHPSGLWRNTPIPVHLGPSYEANTSPPQVNGMINAALVRGEGSPGFYVGPDTQNQWVDSSQKLTGHDCKAIPEYSHAHALQLNPTLLGPENQHPVTVDTVHPPQDVSTGTCLEPLQVPISPYNMVHNQEVLRNDTHLATAKTFESNTLLGEGIVVKIEDKVQGPDTQTVSYSEQNKVAGNACPAAASVDSNNSKSKPEGDCRHVEKLADEDHSVPQDYKHLGNQLSLLPALIASVKRDAFEVAEEVKTAAKDGPANSHNQNLDAKEKTINEVEPANANGDLELNSESDHVDTSKIEPTKAEEEAIARGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLITDFWKEALMLSSLHHPNVVSFYGIVRDGPDSSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGVVMWELLTGDEPYADMHCASIIGGIVNNSLRPQIPSWCDPEWKSLMESCWASDPAERPSFSEISKKLRSMAASMNVK 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01301 1118 Gene3D Transferase(Phosphotransferase) domain 1 931 1118 - -
Vimu7g01301 1118 PRINTS Tyrosine kinase catalytic domain signature 1079 1101 IPR001245 GO:0004672|GO:0006468
Vimu7g01301 1118 PRINTS Tyrosine kinase catalytic domain signature 1035 1057 IPR001245 GO:0004672|GO:0006468
Vimu7g01301 1118 PRINTS Tyrosine kinase catalytic domain signature 927 940 IPR001245 GO:0004672|GO:0006468
Vimu7g01301 1118 PRINTS Tyrosine kinase catalytic domain signature 964 982 IPR001245 GO:0004672|GO:0006468
Vimu7g01301 1118 Pfam PB1 domain 60 145 IPR000270 GO:0005515
Vimu7g01301 1118 ProSitePatterns Protein kinases ATP-binding region signature. 851 872 IPR017441 GO:0005524
Vimu7g01301 1118 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 838 932 - -
Vimu7g01301 1118 SMART PB1_new 59 144 IPR000270 GO:0005515
Vimu7g01301 1118 SMART serkin_6 845 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01301 1118 CDD STKc_MAP3K-like 851 1108 - -
Vimu7g01301 1118 Gene3D Phosphorylase Kinase; domain 1 831 930 - -
Vimu7g01301 1118 Pfam Protein tyrosine and serine/threonine kinase 846 1108 IPR001245 GO:0004672|GO:0006468
Vimu7g01301 1118 SUPERFAMILY CAD & PB1 domains 61 151 - -
Vimu7g01301 1118 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 64 146 - -
Vimu7g01301 1118 SUPERFAMILY Protein kinase-like (PK-like) 837 1106 IPR011009 -
Vimu7g01301 1118 CDD PB1_UP2 48 144 - -
Vimu7g01301 1118 ProSiteProfiles Protein kinase domain profile. 845 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01301 1118 PANTHER SERINE-THREONINE PROTEIN KINASE 101 1111 - -
Vimu7g01301 1118 Gene3D - 63 147 - -
Vimu7g01301 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 970 982 IPR008271 GO:0004672|GO:0006468
Vimu7g01301 1118 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 933 1118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01301 Vimu-Chr7 12437323 12442613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01301 40 1118 MAP Kinase Kinase Kinase AT5G57610 54.066 0.0 1041
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu7g01301 PK_Tyr_Ser-Thr 5.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01301 - - gmx:100779077 1887.85