Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01300 ATGTCTAGCTACCTCCACATGTTATTTCTTTGGTTATTCCTAGAAATTAACCGAACATGTTCCAACATAATCTGTATCTATAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAACTGCTTGGGAGGCGCAAACAATCTAACTTCAACACAAAGGACACAAATAATGGAATAGAGGAGAACTCTTATTCAAATGCCCTAAGCAGCTCGGCCCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACGATAACCCTGCGTTGTGGCCTAAGTTGCATCCTTTCCAAGAAAAGATGATCCAGAGCCTGCAATCTTTGAATGACGGCTCTAACCCTGTGGTGCAAGATGCCTTGCCTTCCCCCCATGTCGAACAAGGACAAAAAGATGAGTTCATCTACAAGCCTCAACATGATGGTGCAAAGATCCATAGCCCACAGGTTCATCTTCTGGAGAATATTCCTTCAAGTAACAGTGGAGTTCCCTTTGCTGCTTCTGAGAGCAATAATAATCCAATGCACTCAAGTCTTGCACCAAGAGCTGAGGCTGTTGAACAGACTAATAATGTGGGATTTCAGCAACTCGGTGCACTGCAAACTGAACTAGATGACATTCTCAACAACAGAACAATGGGTTACGTGCCTCAGGAAGATCATCAGATGGCTGAATTTGATTGTTTCAGAGAGATGAATAGCTCCAAGGACAGCCTGATTTGGTGGTCCAATGATTCTGATACCAGATCAGCATCCTCAAATTCCTGGGATTCATCTACTACTCCAGCTCTTTTAACACAAGGGATATTCCAAGATTATGAACTGGGTTACAGTCTGTAG 903 0.4286 MSSYLHMLFLWLFLEINRTCSNIICIYRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFNTKDTNNGIEENSYSNALSSSALERLQLHMQLQSLQNPFSFYDNPALWPKLHPFQEKMIQSLQSLNDGSNPVVQDALPSPHVEQGQKDEFIYKPQHDGAKIHSPQVHLLENIPSSNSGVPFAASESNNNPMHSSLAPRAEAVEQTNNVGFQQLGALQTELDDILNNRTMGYVPQEDHQMAEFDCFREMNSSKDSLIWWSNDSDTRSASSNSWDSSTTPALLTQGIFQDYELGYSL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01300 300 ProSiteProfiles Myb-like domain profile. 28 52 IPR001005 -
Vimu7g01300 300 CDD SANT 28 52 IPR001005 -
Vimu7g01300 300 PANTHER OS09G0431300 PROTEIN 28 283 - -
Vimu7g01300 300 Gene3D - 12 82 - -
Vimu7g01300 300 SUPERFAMILY Homeodomain-like 27 57 IPR009057 -
Vimu7g01300 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01300 Vimu-Chr7 12430400 12431302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01300 28 136 MYB Transcription Factor Family AT5G57620 62.069 1.33e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g01300 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01300 K09422 - gmx:778083 459.529