Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01288 ATGGTACTTCCCTCCCCTGCCAAAATACTCATTGGCCTCTCCTTAGACCCAGAGGACAGCAAGGAGCTTCTCTCATGGGCTGTAAGAGTTCTGGCCAATCCAAATGACACCATTGTGGCTGTGCATGTTCTTGTTACTGCGGATAAGAAGAAGCGAGTCTCCGTCAGAAAAAGGCAGTCACAACTTAGACAAGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACCTGTTGGTCTAAGCAGGTTAATTTGGAGGCAAGGGTGGCACTCAATTCCACAGTTGGTGAAGGTTTAGTGGAGGAAACCAAGTCCATCAACGCTGACTTTCTTCTTATTCGTGGCTCCAGAAACCAAACTAATAAGTATGAACTGAATGATATAGTAGCAGTTGAATTGCCAGGTATTGCTTTGAGCATGCACATGAAGGGTGCACAATGGTATGTGTCGGAAGACGTGGTAAGGCAGATCAAAGTGTCAAACCAAATTCAACTCATTGTCAAGGATTATATATCAGGAATCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAAATGGTCTAGAGGGACAATCAAACAGCACAGAAGATGATACCTTTAGCACTAGGGTCTCAAGCACCACTTATACCCCATCCTTGGATTCTAAGATTAAGAGCCGATCCAAGATTAAACCACAGTTCTCATTTAGGTTCATAGTCTCATTCCTTGCTTCACCATTTAGAAGGAAAAACTTTAACATTTATAGAAGTGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAAATATCCAATGCTACCAACAACTTCCACCAAGATAATTTGGTTGGAAGAGGTGGGTATTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAACCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTCCTTATGGAATTGGGTGTTATTGGACATGTCTGTCATCCTAATACTGCAACTTTAGTGGGTTGCTGCATTGAAAATGGGCTATATCTGATTTTCAATTACTCTCAAAATGGAAATTTGGCAACTTCATTGCATGGTAAAAATGAACCTCGTATTCCAGACAAGAATTGCATGTTATGTCATTTGAGATTAAATGCATTGGAATCATTATCAGGCAAAGGAGGAGATTCACTTGACTGGCCAATCAGGTACAAAATTGCCATTGGTGTTGCAAGGGGTCTCCATTATCTTCATAAATGTTGCAAACACCGGATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGACTATGAACCACAGATTGCTGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACTCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTATTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATTCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCAAAACAGAACCTTCTCTTATGGGCAAAGCCTCTAATGGAATCAGGGAACGTCGTTGATCTTGCTGATCCAAGAATGGAAGGTAAATATGATGGAGAGCAACTGTACAGGGTAGTGCTGGCGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGCGAGGTGTTGGAGCTGCTAACCAGTGGAAAAGACAGTGAGGTTGGAAAAAGCTGGAGGATCCCAAAGTTCACCTCTGATGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACCTATCTTTGGAGGATTATTTAATGATAGTTGAGTTATGGCGGGTCATGCACCCGTGGTGGCTTGTGATACTTAGGCTTCACCGCCCTGCCACACTCACGAGGTTAGTCTGCGCCTTGGAGCATGATGGAAGCATCCAAAACTAA 1953 0.4306 MVLPSPAKILIGLSLDPEDSKELLSWAVRVLANPNDTIVAVHVLVTADKKKRVSVRKRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEARVALNSTVGEGLVEETKSINADFLLIRGSRNQTNKYELNDIVAVELPGIALSMHMKGAQWYVSEDVVRQIKVSNQIQLIVKDYISGIKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSLDSKIKSRSKIKPQFSFRFIVSFLASPFRRKNFNIYRSEKRQPLLKCFSYEQISNATNNFHQDNLVGRGGYSEVYKGDLSDGRTIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLIFNYSQNGNLATSLHGKNEPRIPDKNCMLCHLRLNALESLSGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQIADFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNVVDLADPRMEGKYDGEQLYRVVLAASYCVRQTATWRPPMSEVLELLTSGKDSEVGKSWRIPKFTSDELDDYSMVFGYDVPSDLSLEDYLMIVELWRVMHPWWLVILRLHRPATLTRLVCALEHDGSIQN 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01288 650 PANTHER OS08G0249100 PROTEIN 385 580 IPR046958 -
Vimu7g01288 650 SUPERFAMILY Protein kinase-like (PK-like) 248 567 IPR011009 -
Vimu7g01288 650 ProSitePatterns Protein kinases ATP-binding region signature. 280 302 IPR017441 GO:0005524
Vimu7g01288 650 Pfam Universal stress protein family 8 115 IPR006016 -
Vimu7g01288 650 Gene3D Transferase(Phosphotransferase) domain 1 380 581 - -
Vimu7g01288 650 Pfam Protein tyrosine and serine/threonine kinase 276 565 IPR001245 GO:0004672|GO:0006468
Vimu7g01288 650 FunFam Putative receptor-like serine/threonine-protein kinase 241 350 - -
Vimu7g01288 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Vimu7g01288 650 ProSiteProfiles Protein kinase domain profile. 274 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01288 650 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 379 581 - -
Vimu7g01288 650 SMART serkin_6 274 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01288 650 MobiDBLite consensus disorder prediction 186 207 - -
Vimu7g01288 650 Gene3D Phosphorylase Kinase; domain 1 238 350 - -
Vimu7g01288 650 CDD USP_Like 8 119 - -
Vimu7g01288 650 Gene3D HUPs 4 127 IPR014729 -
Vimu7g01288 650 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01288 Vimu-Chr7 12308852 12313822 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01288 258 577 Receptor kinase-like Gene Family AT1G53420 42.462 6.60e-71 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu7g01288 PK_Tyr_Ser-Thr 3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01288 - - gmx:100782832 974.156