Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01286 ATGGGATCCTCTTTCAGTTGCTGTGGCTCAGAGAAGGTCGAAGAAGTGCCAACATCATTTGGCGTGGTTAACAATTCATGGAGAATATTCACGTACAAGGAGCTGCATGCGGCTACCAACGGATTCAGTGATGATAACAAGCTTGGGGAAGGTGGTTTTGGAAGCGTGTATTGGGGAAGAACCAGTGATGGTCTTCAGATAGCGGTAAAGAAACTGAAAGCAATGAACTCGAAGGCAGAGATGGAATTTGCTGTAGAAGTCGAAGTTCTTGGAAGGGTTAGGCACAAAAACTTGCTGGGTCTCAGGGGCTATTGTGTTGGGGATGATCAACGACTCATAGTTTACGATTACATGCCAAATCTCAGCCTGTTATCTCATCTCCATGGCCAGTTTGCTGTTGAAGTGGAACTCAACTGGCAAAGGAGAATGAACATTGCAATAGGGTCTGCAGAAGGGCTTCTGTACTTGCACAGTGAGGTGACACCACACATCATACACAGGGATGTGAAAGCAAGTAACGTGCTTCTGAATTCAGAGTTTGAGCCTCTAGTTGCAGATTTTGGGTTTGCAAAACTAATCCCAGAAGGAGTTAGTCATATGACTACACGTGTGAAGGGTACATTGGGATACTTGGCACCTGAATATGCGATGTGGGGGAAGGTTTCGGAAAGTTGTGATGTGTATAGCTTTGGAATTCTGCTGTTGGAACTTGTGAGTGGAAGAAAGCCCATTGAGAAGCTCCCTGGTGGGCTTAAGAGAACAATAACTGAGTGGGCCGAGCCTCTAATAAGCAAAGGAAAGTACAGGGAGCTGGTTGATCCAAAACTGAGGGGGAACTTTGATGAAAACGAAGTTAAACAAGCAATCAATGTGGCTGCTCTTTGCGTGCAGAATGAGCCTGAAAAACGACCCAACATGAAGCGAGTGGTTAACCTTCTTAAAGGGCAAGAATCTGAAGAGAAGAAAGTGAGTGTGACGAGGATAGACAGTATCAAGTACACTGAAGAATTATTGGCACTTGATGATGAAGAACTCGATGATGCAACTGCTAGTTATGGTGTTTTCAGTGCCATTGAAGTCCAAAACATGAACGATCCATATAACCGTGCTCACTTCAACAAAATCGGTTAA 1131 0.4456 MGSSFSCCGSEKVEEVPTSFGVVNNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVEVELNWQRRMNIAIGSAEGLLYLHSEVTPHIIHRDVKASNVLLNSEFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVSGRKPIEKLPGGLKRTITEWAEPLISKGKYRELVDPKLRGNFDENEVKQAINVAALCVQNEPEKRPNMKRVVNLLKGQESEEKKVSVTRIDSIKYTEELLALDDEELDDATASYGVFSAIEVQNMNDPYNRAHFNKIG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01286 376 SUPERFAMILY Protein kinase-like (PK-like) 26 315 IPR011009 -
Vimu7g01286 376 Gene3D Transferase(Phosphotransferase) domain 1 118 333 - -
Vimu7g01286 376 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Vimu7g01286 376 CDD STKc_IRAK 48 315 - -
Vimu7g01286 376 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Vimu7g01286 376 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Vimu7g01286 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vimu7g01286 376 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 331 - -
Vimu7g01286 376 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Vimu7g01286 376 PANTHER OS01G0253100 PROTEIN 25 320 - -
Vimu7g01286 376 ProSiteProfiles Protein kinase domain profile. 42 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01286 376 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01286 Vimu-Chr7 12304085 12305795 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01286 1 342 Trihelix Transcription Factor Family AT1G70460 44.290 3.00e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vimu7g01286 PK_Tyr_Ser-Thr 8.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01286 - - gmx:100783365 670.233