Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01281 ATGCATTGCTTTCGTCCGATGATTAAAAGTACTGGCCAGTTCTCACTATATACGATGAAGGGTAAGTGTTTTTTATGTCTTTTATCTTGTTTTTTACTTTTTTTGCTTGTGCTACTACAGGCGCCAACTGGAAATGGATCAAATGATAGAATGAATAATGGAGAGATAAAGTTAATAGTAAGGATCCCCAAGAGCGATTTCCCTCAGTTTGTGAATGTAGTTTGGGACCCTTCTCAGCAAAAGTACACCGCATCTGGATATTGCATGGATGTTTTCAATGCCGCTGTAACCTACTTACCCTTCGATGTTTCTCTACGTGTTTTACCTGCTGTTGTTGACTCAAGCCAGGTTTATAAAACACACCATGCAAGTCCAAAACAAATCTTAACAGAGAGCGAAGTTGTGGTAGGAGATGTGACGATCCTGGCCAACCGTTCGAAGTTTGTAGATTTCACAGTACCATATATTGCATCAGGTGTTAAAATGGTAGTACCAGTTAAACACGGGAGGGATCAAAACATGTGGACTTTTGTTAAACCCTTCAGTTGGGATCTTTGGTTGAGCATAATCATCATCTCTACCTTCACAGGGCTTGCCATACTCATCATGGAAAGAAACGTAAACGCTCTGCCTAATCAAGAGGGTTCTCCAAATCAGAAAAAGCTTTGCCCTGCAACCATCTTGTGGTTTCCATTGTCACAAGCCATTCTTCCTGAAAGAGAAGTAGTGGTAAAGAGCTGCTCAAAATTTGTGCTGATGGTTTGGCTTCTACTGGCGTTCGTTCTCATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTAGATCAACTGCGACCCAGTTTTCTGAACCTTAATGATATAAGGAGAGGGGGTTACTACGTTGGATACCAGTCTGAGTCTTTCGTTTACGATGTCCTGATTGACCAATTTAAGTTTGACCCATCCAAACTAAGGCCATACAGAAACATTGCTGAGTACCATGATGCTCTAAAGCTTGGAAGTCAAAATGGGGGTGTTGCAGCTATATTCGACGAAGTTCCCTACCTTAAAATTTACCTTCAAGAATACGGATCCAATTACGTTATGTCTGGCCCCGAATATAGAAATGCTGGGTTTGGTTTTGTATTCCCTCTAAATTCCAATCTCACGGCTTACTTTTCGACAGCCATCCTGAATGTGATTGAAAGTGGAAAAATGAATGAGATTGAGGAAAATTATTTTGGAAAGAATTATATTGGAGAAGTTTCGTCTGGGGAAATATCTTCTGAAACTCTCAGTCTCAGCTTTCACAGCTTCTCTGGGCTTTTCTTGATTTCTGGGATTTCTACTTTGTTAGCGTTATTGGTTTCAGAAAGATTTATTTGGCAAAGGGTCATTTTGATGGCTAAAGCATTGACTGAGATTATGTCCCCAATTCATCTTTTCAAGAAGAAAACACGTACTCATCCAATTCATGATTCTACTATTGGAACGGAGGATTAA 1488 0.3999 MHCFRPMIKSTGQFSLYTMKGKCFLCLLSCFLLFLLVLLQAPTGNGSNDRMNNGEIKLIVRIPKSDFPQFVNVVWDPSQQKYTASGYCMDVFNAAVTYLPFDVSLRVLPAVVDSSQVYKTHHASPKQILTESEVVVGDVTILANRSKFVDFTVPYIASGVKMVVPVKHGRDQNMWTFVKPFSWDLWLSIIIISTFTGLAILIMERNVNALPNQEGSPNQKKLCPATILWFPLSQAILPEREVVVKSCSKFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSFLNLNDIRRGGYYVGYQSESFVYDVLIDQFKFDPSKLRPYRNIAEYHDALKLGSQNGGVAAIFDEVPYLKIYLQEYGSNYVMSGPEYRNAGFGFVFPLNSNLTAYFSTAILNVIESGKMNEIEENYFGKNYIGEVSSGEISSETLSLSFHSFSGLFLISGISTLLALLVSERFIWQRVILMAKALTEIMSPIHLFKKKTRTHPIHDSTIGTED 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01281 495 Gene3D - 49 174 - -
Vimu7g01281 495 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 52 459 IPR015683 -
Vimu7g01281 495 SMART GluR_14 57 411 IPR001320 GO:0015276|GO:0016020
Vimu7g01281 495 Pfam Ligand-gated ion channel 412 443 IPR001320 GO:0015276|GO:0016020
Vimu7g01281 495 Pfam Bacterial extracellular solute-binding proteins, family 3 133 411 IPR001638 -
Vimu7g01281 495 Gene3D - 175 311 - -
Vimu7g01281 495 SUPERFAMILY Periplasmic binding protein-like II 27 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01281 Vimu-Chr7 12246837 12248854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01281 53 484 Ion Channels AT2G29110 37.969 4.46e-76 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01281 K05387 - gmx:100807817 592.038