Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01271 ATGCCTCCTCCCACGCACCACCCCCAACCCCAACCAAAACCTAATCCCAATTTTCTTTCTCTCTTCCTCAAACCTATCATTATGCTTCTTCTCACCTCCCTCTTCTTCCTCTTCATTGGCTTCGCCGCCTTTCTCCTCCTCCACCTCTTCCTCCTTGGCGGTGCCTTCCACCGCCTTCGCTTCCGCCCCTCCGCCGCCACTGCCTCCTCTTCCAGCGGCCTCCTTCCTCGCGAAATCAACAAGCTTCCTCGCTTCCGCCTCTCCCATGGATCCCAAATGCTAGCCGACACCCACTGCGTTGTCTGTTTAGACGCCTTTCGCAGCGGCCAGTGGTGCTGGAAACTGGCCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAAGTCGCCGCATGCCCCACTTGCCGTACATCCGTGCGATTTAATACCGGGCCTCCGGTACAAGACTCAACACTAGGTTCTACTTTTGCCCAGTTTCGAGCCTGCGAACCTGACTCCAGTGCTGTCACCCTTTTATAG 534 0.573 MPPPTHHPQPQPKPNPNFLSLFLKPIIMLLLTSLFFLFIGFAAFLLLHLFLLGGAFHRLRFRPSAATASSSSGLLPREINKLPRFRLSHGSQMLADTHCVVCLDAFRSGQWCWKLAACGHVFHRRCVDTWLLKVAACPTCRTSVRFNTGPPVQDSTLGSTFAQFRACEPDSSAVTLL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01271 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 152 - -
Vimu7g01271 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 148 IPR013083 -
Vimu7g01271 177 SMART ring_2 99 140 IPR001841 -
Vimu7g01271 177 SUPERFAMILY RING/U-box 90 149 - -
Vimu7g01271 177 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Vimu7g01271 177 Pfam Ring finger domain 98 141 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01271 13 166 C3H Transcription Factor Family AT2G18670 44.516 8.79e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01271 - - pvu:PHAVU_003G150700g 238.424