Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01269 ATGGGTGGAGGTGACGCCTTTGTGTCTCAACCAGAACAGCCACCATATTTTCTCTCACAGCCAAACTCGCCTTTTCCTCCCACTGCTCGATCTGATAGTTTCAGTTTGAACGATAGGGCGTTGAAGGTCAGTCCGAGCATACTTCTGATCATTATAATTCTGGCTATTGTTTTCTTCATTTCCGGTCTGCTACACCTGCTGGTTAGATTTCTGTGGAGACCCCAAACTCGAGAGCCCGATGATTTAGACAATGCCACTGCTCTTCAAGGCCAATTACAGCAACTCTTCCACCTGCATGATGCTGGGGTCGACCAGTCATTCATTGACACCCTCCCTGTCTTCCTCTACAAGGCCATCATAGGACTCAAGAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTTCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTATGTAGAGCCAGCTTACTCCCTGAATTCTCCGTGGGCAACTCGTGTTCTCCCTATGTTCTTGTCCTTGAATCTGGGAGTGAGAGTTCCAGGGAGATTGTTCCTGAAAGAGAGGCTGCAGTCGGAAGGTCTAGTTCGGTTATGACTTCGAATTCTCGTCTTGGATGCCATGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTATTGAGTGAAGCTCCTGATCCAACAGTACCAAATGGTGTGGAAAAAGTGGTTACTGTTAAGCTGGGAAAGTTTAAAAGTGTGGATGGTGGAGGTGATGGTGGGGAAGGGAGTAGTACTACCAACAATGTGGATTCTAGAAGGTGTTTTTCCATGGGGTCATTTGCTTATGTTATGGACGAAAGTTCCTCACTCCAAGTGCCCATACGAACCCCAATCAAGAAGCAATCGAGTAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGTCTTTGATGCAACTATAGTTGAGGACGATGCTGCTAGTGGTGGGGCTGCAACTGAAAGGACAACTTGTGATGGGAATAGTGCTGCAATTGGAAGAAATAGAAAGGAAAGTTTTTCAGTATCAAAGATTTGGCTCAGGGGGAAGAAGGATAAGCCAAATGCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCATTTCGCTTCCCGGCGAAGTCCAGTGCTGTTGCTGCTTCGGTCAGTGCCGATGATGATTTGAAAGGAAAGAATTCTAAGTTTGATACAAGGAGTACCATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGCGAGTTCGATTTCGATGAGGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGAGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAACAAGGTTGTTCACTCCGCTTCCAACCTCTAA 1521 0.4635 MGGGDAFVSQPEQPPYFLSQPNSPFPPTARSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNATALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSVGNSCSPYVLVLESGSESSREIVPEREAAVGRSSSVMTSNSRLGCHGDSEFGSTRVDLKSGELLSEAPDPTVPNGVEKVVTVKLGKFKSVDGGGDGGEGSSTTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAVFDATIVEDDAASGGAATERTTCDGNSAAIGRNRKESFSVSKIWLRGKKDKPNAVADSSRRAVSFRFPAKSSAVAASVSADDDLKGKNSKFDTRSTISEMDIGKWENGGGSEFDFDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01269 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Vimu7g01269 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 392 - -
Vimu7g01269 506 MobiDBLite consensus disorder prediction 312 335 - -
Vimu7g01269 506 FunFam RING-H2 finger protein ATL46 90 175 - -
Vimu7g01269 506 CDD RING-H2_EL5-like 127 170 - -
Vimu7g01269 506 Pfam Ring finger domain 127 170 IPR001841 -
Vimu7g01269 506 MobiDBLite consensus disorder prediction 1 25 - -
Vimu7g01269 506 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vimu7g01269 506 SMART ring_2 128 169 IPR001841 -
Vimu7g01269 506 SUPERFAMILY RING/U-box 107 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01269 Vimu-Chr7 12095094 12098235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01269 35 506 C3H Transcription Factor Family AT2G18650 45.808 1.57e-102 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01269 - - gmx:100797283 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01269 7 12095094 12098235 Vimu7g01269 7 12095094 12098235 ECH