Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01258 ATGGGTAGTCTAGCAAGCCATCTTCCTCTATTTGTGATGGTAGGTCTGCAAGTTCATTATGCAGCACTAGCCATCTTCACAAGAGCAGCCCTGTTAGATGGGTTGAGTACAACGGTCTTTGTAGTGTACAGGCAAGGCATAGCCACCTTGGCTTTGGCCCCTATGTTTTTCTCTTCTAAGAGGAGACAGTCGGTAAAAAGTTGTTTGGGATTCAGAAGCATCTTTTTGATGTTCGTCACCGCTCTTGTTGGAGTTACAGCAAATCAGAATGCATATTTCAGAGGTTTATATTATTCATCTTCTACTGCAGCTACAGCAATGAGTAATCTGATACCTGCTTTAACGTTTGTAATTGCAGCAATTGCGGGATTTGAGAAACTTGAACTACGTAGCTTGAGAAGCATGGCGAAGATATTAGGAACAATTTGCTGTGTTAGTGGAGCCTTAACCATGGCCTTGGTCAAAGGACGTAAACTCTTACACACAGAGTTCCTTCCTTCTATACATCTCACTGGCAGTAATGAAGGTGACGATTGGCTGCTGGGTTGTCTATTGCTTTTAGCAAGCAGTGTTTTCTGGTCTTGTTGGATGATCCTGCAGGTACCAATCGCTTCGTCCTGCCCAGACCATTTATTATCAACCTTTTGGATGTGTCTCTTTTCAACAGTACAGTCAGCCCTATTTGCCCTACTCTCAGAGCCGGATCTTGAAGCATGGATTTTGCATTCACCTTTACAGATTTCATGTTCTTTATACGCAGGACTCGGAATAGCGGTTAGTTTCTTTATTCAATCCTGGTGCATCTCAGAAAGAGGTCCTCTATACTGTGCAATGTTCAACCCTTTAGCAACAGTAATCACTGCCTTCATAAGTGCAACATTCTTACAAGAAGAATTATACATCGGAAGTTTGATAGGGGCTGTTGGAGTTATTGCTGGTTTGTATATTGTGCTTTGGGGTAAAGCTAAAGAGTTTGCTGAGATTAAACCAGCGGCACCACAATCAAACTTGCAAGATGATGAGATAAGTAGTAGGATAGATTTGGAACAACCCCTTCTATCAGATAAATCTGAACAAGTAACAGAGACAGATAGCAAGGTGTAG 1104 0.4212 MGSLASHLPLFVMVGLQVHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPMFFSSKRRQSVKSCLGFRSIFLMFVTALVGVTANQNAYFRGLYYSSSTAATAMSNLIPALTFVIAAIAGFEKLELRSLRSMAKILGTICCVSGALTMALVKGRKLLHTEFLPSIHLTGSNEGDDWLLGCLLLLASSVFWSCWMILQVPIASSCPDHLLSTFWMCLFSTVQSALFALLSEPDLEAWILHSPLQISCSLYAGLGIAVSFFIQSWCISERGPLYCAMFNPLATVITAFISATFLQEELYIGSLIGAVGVIAGLYIVLWGKAKEFAEIKPAAPQSNLQDDEISSRIDLEQPLLSDKSEQVTETDSKV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01258 367 MobiDBLite consensus disorder prediction 332 367 - -
Vimu7g01258 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
Vimu7g01258 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 216 322 - -
Vimu7g01258 367 Pfam EamA-like transporter family 181 318 IPR000620 GO:0016020
Vimu7g01258 367 Pfam EamA-like transporter family 11 143 IPR000620 GO:0016020
Vimu7g01258 367 PANTHER WAT1-RELATED PROTEIN 9 325 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01258 Vimu-Chr7 11976335 11980203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01258 1 367 Nodulin-like Gene Family AT4G30420 43.928 4.23e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01258 - - gmx:100816384 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01258 7 11976335 11980203 Vimu7g01258 7 11976335 11980203 ECH