Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01245 ATGCTCTTCTCTCCCTCCTCTTCCACTTCCACTTCCACCACCCTTATGGCTCTGCTTTTCCTCTTTCTCCTCTTCTTCCTCTCTCTTTCTTCTGCTTCTCAGCCTCGCAATCCCGAAGTGGAGGCTTTGATGAACATAAAAGCAGCTCTCAATGATCCTCACGGCGTCTTGAATAACTGGGATGAATACTCCGTCGACGCTTGCAGTTGGGCCATGATCACTTGCTCTTCTGATGACCTTGTCATAGGCTTAGGTGCGCCTAGCCAATCTCTCTCTGGCACTTTCTCTCCGGCAATTGGAAATCTAACAAATCTTCGACAAGTATTGCTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAGCGCTTCCCAAGCTTCAGACATTAGACCTTTCCAATAACAGATTCTCAGGGGTGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACCTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGAGTCACTGGCAAAAACCCCACAGCTTGCTTTCTTGGACCTGTCTTATAACAATCTCAGTGGACCATTACCTAAGTTCCCAGCCAGGTCATTCAAGTATGCTTCTCTCTTTATTGCTCATCTGTTTGTTTTGTGGACACGTATTGTGGGCAACCCATTAGTTTGTGGGAGCAGCACTACTGAAGGTTGCTCTGGGTCAGCGACCCTCATACCAATTTCCTTCTCGCAAGTGTCATCAGAAGGAAAACACAAATCCAAAAAACTAGCAATAGCACTTGGGACCAGTCTTAGTTGTGCTTCTGTCATCCTCCTGCTTGTTGGGCTATTTTGGTATAGAAAGAAACGACAGCTCGGAGCCATCCTATATATCAGTGATTACAAGGAAGAAGGAGTTCTTAGCTTGGGAAATTTAAAGAATTTCACTTTCAGAGAGCTTCAACATGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTCTATCGGGGGAAGTTTGGAGATGGCACGATGGTAGCGGTGAAAAGGCTGAAAGATGTAAATGGCAGTGCTGGCGAATTGCAGTTCCAAACAGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGCTATTGTGCTACTCCTAATGAAAAACTTTTGGTTTATCCTTATATGTCTAACGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACTAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTACACGAGCAATGTGATCCAAAGATAATACACAGAGACGTGAAGGCAGCCAATGTGCTTCTGGATGACTATTATGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCACGCTGATTCCCATGTTACCACTGCTGTCCGTGGCACTGTTGGACACATTGCACCTGAGTACCTCTCGACCGGCCAATCATCTGAGAAAACAGATGTATTTGGATTTGGCATTCTTTTGTTAGAGCTCATAACCGGGATGACAGCACTCGAGTTTGGGAAAACGGTGAATCAGAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAAGGTTGCAGTGTTGGTGGACAAAGAGCTAGGAAACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCTGAAGTGGTTCGAATGCTAGAAGGTGACGGGCTTGCTGAGAAGTGGGCATCATCACATAATTACGGTAATCACGACATGAACCCGAGCCATAGCAACAATAGTTCATCCCTCCCTACCTCTGCTTCGAAACATGATGATGTTCATGACCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1983 0.4523 MLFSPSSSTSTSTTLMALLFLFLLFFLSLSSASQPRNPEVEALMNIKAALNDPHGVLNNWDEYSVDACSWAMITCSSDDLVIGLGAPSQSLSGTFSPAIGNLTNLRQVLLQNNNISGNIPPELGALPKLQTLDLSNNRFSGVIPASLSQLNSLQYLRLNNNNLSGSFPESLAKTPQLAFLDLSYNNLSGPLPKFPARSFKYASLFIAHLFVLWTRIVGNPLVCGSSTTEGCSGSATLIPISFSQVSSEGKHKSKKLAIALGTSLSCASVILLLVGLFWYRKKRQLGAILYISDYKEEGVLSLGNLKNFTFRELQHATDNFSSKNILGAGGFGNVYRGKFGDGTMVAVKRLKDVNGSAGELQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYYEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGNHDMNPSHSNNSSSLPTSASKHDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01245 660 FunFam Somatic embryogenesis receptor-like kinase 1 397 609 - -
Vimu7g01245 660 Pfam Protein kinase domain 321 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01245 660 Gene3D Phosphorylase Kinase; domain 1 290 396 - -
Vimu7g01245 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Vimu7g01245 660 ProSiteProfiles Protein kinase domain profile. 320 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01245 660 FunFam Putative LRR receptor-like serine/threonine-protein kinase 36 233 - -
Vimu7g01245 660 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vimu7g01245 660 SMART serkin_6 320 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01245 660 Gene3D Transferase(Phosphotransferase) domain 1 397 607 - -
Vimu7g01245 660 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vimu7g01245 660 MobiDBLite consensus disorder prediction 625 640 - -
Vimu7g01245 660 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515
Vimu7g01245 660 MobiDBLite consensus disorder prediction 602 660 - -
Vimu7g01245 660 SUPERFAMILY L domain-like 36 209 - -
Vimu7g01245 660 Gene3D Ribonuclease Inhibitor 36 233 IPR032675 -
Vimu7g01245 660 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 599 - -
Vimu7g01245 660 SUPERFAMILY Protein kinase-like (PK-like) 303 590 IPR011009 -
Vimu7g01245 660 MobiDBLite consensus disorder prediction 603 624 - -
Vimu7g01245 660 SMART LRR_typ_2 102 125 IPR003591 -
Vimu7g01245 660 SMART LRR_typ_2 126 149 IPR003591 -
Vimu7g01245 660 SMART LRR_typ_2 150 173 IPR003591 -
Vimu7g01245 660 FunFam Somatic embryogenesis receptor kinase 1 290 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01245 Vimu-Chr7 11846634 11851088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01245 12 660 Receptor kinase-like Gene Family AT5G16000 61.527 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu7g01245 Pkinase 8.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01245 - - gmx:100797186 1110.13