Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01242 ATGGTGCAACCTTTTTCCATGGCCAAAAGATCACACTCACAGCTTCGAACCCAGAAAAACAATGCAACCAACATTGCCAATAATCTTAATGCAACCAACACTGTCCCCACCAAGGTCAAACGAACAAGGAGAAGTGTTCCCAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACTAGGCACCGATGGACTGGTCGCTACGAAGCTCATTTATGGGACAAGCATTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGGTGCTTATGACAATGAAGTGGCAGCAGCACATGCTTATGATCTAGCTGCACTAAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTATCTGAACGAACTGAAAGAAATGGAGGGTCAATCAAGGGAGGAGTATATTGGATCTCTGAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGATTTCTAAATACAGAGGGGTTGCAAGACATCATCACAATGGACGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTGGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTACGACCTCGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATCAAGTGGCTTAAGCCTAATAACAACACCAACAATAATGACCAGATTAGCATTAATCTCAGTGACATGAATAACAATTGCACCAGCAGCAGCTTCACCCCAAACCCTGATCAAGAGCAAGAGCAAGAACTAAGCTTCCTCCACAACCAGGATTCACTGAATACTGTTGTAGAAGAAGCGACATCGGTGACACATCAGCCCCGTGCAGCAGGTGCCACGTCAGCATTGGAGCTTCTGCTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCGACACAGATGGAATCTGAGTTGCCACAGTGTACGTTTCCTGATCACATTCAAACGTACTTTGAATATGAAGATTCCAACAGATATGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTATCACTGTGACGAGTTCCAGAGTTGA 1116 0.4498 MVQPFSMAKRSHSQLRTQKNNATNIANNLNATNTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNETQNKKGRQGAYDNEVAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNNDQISINLSDMNNNCTSSSFTPNPDQEQEQELSFLHNQDSLNTVVEEATSVTHQPRAAGATSALELLLQSSKFKEMMEMTSVANMSTQMESELPQCTFPDHIQTYFEYEDSNRYEEVDDLMFKFNEFSSIVPFYHCDEFQS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01242 371 FunFam AP2-like ethylene-responsive transcription factor 56 122 - -
Vimu7g01242 371 Gene3D AP2/ERF domain 57 122 IPR036955 GO:0003700|GO:0006355
Vimu7g01242 371 Gene3D AP2/ERF domain 155 216 IPR036955 GO:0003700|GO:0006355
Vimu7g01242 371 MobiDBLite consensus disorder prediction 1 20 - -
Vimu7g01242 371 SMART rav1_2 156 220 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 SMART rav1_2 57 126 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 SUPERFAMILY DNA-binding domain 56 122 IPR016177 GO:0003677
Vimu7g01242 371 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 283 - -
Vimu7g01242 371 ProSiteProfiles AP2/ERF domain profile. 156 214 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 PRINTS Ethylene responsive element binding protein signature 196 216 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 ProSiteProfiles AP2/ERF domain profile. 57 120 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 Pfam AP2 domain 57 112 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 Pfam AP2 domain 155 206 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 FunFam AP2-like ethylene-responsive transcription factor 155 216 - -
Vimu7g01242 371 CDD AP2 155 216 IPR001471 GO:0003700|GO:0006355
Vimu7g01242 371 SUPERFAMILY DNA-binding domain 155 216 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01242 Vimu-Chr7 11814105 11817111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01242 53 218 AP2-EREBP Transcription Factor Family AT5G57390 71.598 1.75e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu7g01242 AP2 5.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01242 K09285 - gmx:100793339 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01242 7 11814105 11817111 Vimu7g01242 7 11814105 11817111 ECH
Vimu7g01242 7 11814105 11817111 Vimu10g00756 10 6629480 6631032 PCT