Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01198 ATGGGGTTTCACAAGAACTACTACAGATGTACTTCTGCTGGATGTCCTGTCAGAAAGCACATTGAATCTGCCGTAGATAACTCAGATGCCGTGATTATAACATACAAGGGAGTACATGACCATGACATGCCTGTGCCCAAGAAACGACATGGGCCACCAAGTGCTCCTCTTGTGGCAGCTGCAGCACCCGCCTCAATGAACAGTTTGCAGGTGAAGAAACCCGATTCCCCACACAAGAAGAAAGTTTCTACTCAATGGTCGGTGGACACAGAAGGAGAACTAACTGGGGAAGCCCTTGAGCTTGGGGGTGAGAAAGCAATGGAATCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 372 0.4812 MGFHKNYYRCTSAGCPVRKHIESAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNSLQVKKPDSPHKKKVSTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01198 123 MobiDBLite consensus disorder prediction 69 89 - -
Vimu7g01198 123 Gene3D WRKY domain 2 45 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g01198 123 SUPERFAMILY WRKY DNA-binding domain 3 44 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g01198 123 Pfam WRKY DNA -binding domain 3 41 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g01198 123 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 4 72 IPR044810 GO:0003700
Vimu7g01198 123 SMART WRKY_cls 3 43 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g01198 123 ProSiteProfiles WRKY domain profile. 5 44 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01198 Vimu-Chr7 11505202 11506001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01198 5 123 WRKY Transcription Factor Family AT4G30935 69.167 2.84e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g01198 WRKY 1.4e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01198 - - gmx:100782194 207.223