Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01196 ATGTCTGACGAAGAGCATCACTTCGATTCTCACGCAGATGCAGGAGCGTCCAAGACGTACCCTCAGCAGGCTGGTACTATTCGCAAGAACGGTTACATCGTCATTAAATCTAGGCCTTGCAAGGTCGTAGAAGTTTCTACATCAAAGACAGGCAAGCATGGACATGCAAAATGCCACTTTGTTGCCATTGATATTTTTAATGGGAAAAAGCTTGAAGATATCGTTCCATCTTCCCACAACTGTGATGTTCCACACGTGAACCGCACTGACTATCAGTTGATTGATATATCTGAAGATGGCTTTGTGAGTCTGTTGACTGATAACGGAAATACCAAGGATGATCTTAGGCTTCCCACTGATGACTCGCTGCTTTCTCAGATTAAAGAAGGATTTGCTGAAGGAAAAGATCTTGTGGTTTCTGTCATGTCTGCTATGGGAGAAGAGCAGATCTGTGCCTTGAAGGACATCGGTCCCAAAAATTAG 483 0.4389 MSDEEHHFDSHADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKEGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01196 160 CDD S1_eIF5A 86 156 - -
Vimu7g01196 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Vimu7g01196 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vimu7g01196 160 Gene3D - 1 85 IPR014722 -
Vimu7g01196 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vimu7g01196 160 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g01196 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Vimu7g01196 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vimu7g01196 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vimu7g01196 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Vimu7g01196 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vimu7g01196 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Vimu7g01196 160 Gene3D - 86 159 IPR012340 -
Vimu7g01196 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01196 Vimu-Chr7 11485977 11488737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01196 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.937 2.04e-104 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01196 K03263 - egr:104436092 317.39