Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01195 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGTACTTTTGTTCAAGCATTTGGAATCTCAGCAACCAAATACTGATGAGTTTTTTGTTTCTGGGTTCTTGAAGCATATGAGTTTAACATCCTCACGAGCCTACAATTTCTCTGCTTCTGTGTGTTCATGGCAAGGGGTTTCCTGTGATGCCAATAGAGAACATGTTGTTGGCTTAGTCTTTTCTGGTATGAACCTCTCTGGCACTGTACCTGATAACACCATAGGCAAGCTAGGCAAACTTCAAACTCTAGATCTTAGCCACAACAAAATTACTGGATTGCCTTCAGATTTTTGGAGCTTAAGCTCCCTCACCAACCTTAATCTCTCCTCGAATCATATTTCTAGCTCACTGACTAGCAACATTGGCAACTTTGGTTTGCTAGAAAGTATTGACTTGTCCAGCAACAATTTCTCTGAGGAAATTCCTGAAACTGTCTGTTCACTGCTGAATCTAAGGGTCCTCAAACTCAACCACAACAGGTTTGCACACAACATACCTTATGGGATTCTCAAATGCCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTCAATGGAACACTTCCTGAGGGTTTTGGTGCTTCTTTTCCCAAGCTTAGGATATTGAACCTTGCTGGGAATAATTTTAATGGTCGTGTTTCAGATATTTCTGGGTTAAAGTCCATTGCTAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCCATTGTGGACATGTTTCAGGGAAGGTTGGAGGTTCTGGACATTAGCAGAAACCAATTTCAAGGCCACATTCCACAGGTACTATACAACTTTAGTAACTGGTCTCATTTAGTTTACCTAGATTTGTCAGAGAATAAGCTTAGTGGGGAGTTTTTTCAAAATTTGAACGAGTCCTTGAATTTAAGACACATTAATCTTGCACACAATAGATTTACCATACAGAAATTTCCCCAAATTGAAATACTCCTGAATTTGGAATATCTGAACTTGTCCAAAACCAGCCTTGTCGGTGAAATTCCTGGTAAAATCTCACAATTAAGCAAATTGAGTGCACTTGATCTTTCTTTGAATCATCTGAGTGGGAAAATTCCCTCGCTGATGAATGAACACCTCCGAGTCTTAGACCTCTCAAACAACAATTTGACAGGAGCAGTCCCTCAATCTGTCTTGGAGAAACTCCCAGGGATGGAGAAATACAACTTCTCTTATAATAACCTAACCCTTTGTGCTTCTGAAATCAGACCTGAGATCCTGCAAACGGCATTCTTTGGATCATTGAACAGTTGTCCAATTGCTGCGAATCCGCGACTCTTCAAAAGAAGAGACACTGGACACACGGGAATGAAGCTGGCCCTGGCACTGACCTTCTCAATGATCTTTGTGCTGGCTGGACTTTTGTTTCTGGCATTTGGTTGCAGAAGGAAAACAAAAATGTGGGAATTCAAGCAATCTTCATACAAAGAAGAACAAAACATTTCAGGTCCCTTTTCATTCCAGACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTATTGAACATCACATTTGCAGACCTCTTGGCTGCAACTTCCAACTTTGACAGAGGCACCCTTTTGGCTGAGGGAAAATTTGGGCCAGTCTATAGAGGATTTCTGCCTGGTGGTATTCACGTGGCAGTTAAAGTTTTGGTTGTTGGTTCTACATTAACAGATGAGGAGGCTGCAAGAGAGCTAGAGTTTCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTTTAACAGGGTATTGTGTGGCTGGGGACCAAAGAATTGCCATATACGATTACATGGAGAATGGTAACTTGCAAAACCTGCTTTACGACCTGCCACTTGGGGTACAAAGCACAGATGACTGGAGCACAGACACATGGGAAGAAACAGACAACAATGGAATTCAAAATGCTGGCTCTGAAGGGTTACTGACATCTTGGAGATTTCGCCACAAGATAGCCCTTGGCACGGCTCGAGCGTTGGCATTTCTGCATCACGGTTGCTCCCCTCCAATAATTCACAGAGCAGTTAAGGCTAGCAGTGTTTATTTGGATTATGACTTGGAGCCGAGGTTGTCTGATTTTGGACTGGCCAAGATTTTTGGAAGTGGCTTGGATGATGAAATTGCGCGTGGCTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATACGACACCCCAACTCCAAAATCTGATGTGTACTGTTTTGGGGTGGTGCTGTTTGAGCTAGTAACTGGAAAAAAGCCAGTTGGAGATGACTACCCTGATGATAAAGATGCAACTTTGGTGAGTTGGGTGAGAGGACTTGTGAGAAAGAACCAATCTTCAAATGCTATTGATCCAAAAATTCGTGACACAGGACCGGATGAACAAATGGAAGAGGCCCTTAAGATTGCTTATCTTTGCACTGCTGACAGTCCCTTCAAACGACCAAGCATGCAACAGATAGTTGGACTTCTGAAGGATATCGAACCTACTGCTGATTAG 2559 0.4248 MGLGVFGSVLVLVLLFKHLESQQPNTDEFFVSGFLKHMSLTSSRAYNFSASVCSWQGVSCDANREHVVGLVFSGMNLSGTVPDNTIGKLGKLQTLDLSHNKITGLPSDFWSLSSLTNLNLSSNHISSSLTSNIGNFGLLESIDLSSNNFSEEIPETVCSLLNLRVLKLNHNRFAHNIPYGILKCQSLVSIDLSSNQLNGTLPEGFGASFPKLRILNLAGNNFNGRVSDISGLKSIANLNISGNSFQGSIVDMFQGRLEVLDISRNQFQGHIPQVLYNFSNWSHLVYLDLSENKLSGEFFQNLNESLNLRHINLAHNRFTIQKFPQIEILLNLEYLNLSKTSLVGEIPGKISQLSKLSALDLSLNHLSGKIPSLMNEHLRVLDLSNNNLTGAVPQSVLEKLPGMEKYNFSYNNLTLCASEIRPEILQTAFFGSLNSCPIAANPRLFKRRDTGHTGMKLALALTFSMIFVLAGLLFLAFGCRRKTKMWEFKQSSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEETDNNGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEYDTPTPKSDVYCFGVVLFELVTGKKPVGDDYPDDKDATLVSWVRGLVRKNQSSNAIDPKIRDTGPDEQMEEALKIAYLCTADSPFKRPSMQQIVGLLKDIEPTAD 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01195 852 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Vimu7g01195 852 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Vimu7g01195 852 SUPERFAMILY Protein kinase-like (PK-like) 532 844 IPR011009 -
Vimu7g01195 852 Gene3D Transferase(Phosphotransferase) domain 1 622 851 - -
Vimu7g01195 852 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 228 847 - -
Vimu7g01195 852 Gene3D Ribonuclease Inhibitor 275 436 IPR032675 -
Vimu7g01195 852 ProSiteProfiles Protein kinase domain profile. 546 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01195 852 PRINTS Leucine-rich repeat signature 353 366 - -
Vimu7g01195 852 PRINTS Leucine-rich repeat signature 92 105 - -
Vimu7g01195 852 ProSiteProfiles Leucine-rich repeat profile. 377 398 IPR001611 GO:0005515
Vimu7g01195 852 Gene3D Ribonuclease Inhibitor 178 274 IPR032675 -
Vimu7g01195 852 SMART LRR_typ_2 353 377 IPR003591 -
Vimu7g01195 852 SMART LRR_typ_2 185 208 IPR003591 -
Vimu7g01195 852 SMART LRR_typ_2 160 184 IPR003591 -
Vimu7g01195 852 SMART LRR_typ_2 112 136 IPR003591 -
Vimu7g01195 852 SMART LRR_typ_2 378 399 IPR003591 -
Vimu7g01195 852 SMART LRR_typ_2 89 111 IPR003591 -
Vimu7g01195 852 SUPERFAMILY L domain-like 46 416 - -
Vimu7g01195 852 FunFam Putative LRR receptor-like serine/threonine-protein kinase 507 621 - -
Vimu7g01195 852 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Vimu7g01195 852 FunFam Calmodulin-binding receptor kinase CaMRLK 255 372 - -
Vimu7g01195 852 Gene3D Ribonuclease Inhibitor 30 177 IPR032675 -
Vimu7g01195 852 Pfam Leucine Rich repeat 375 390 IPR001611 GO:0005515
Vimu7g01195 852 FunFam Nuclear pore complex protein NUP107 32 179 - -
Vimu7g01195 852 Gene3D Phosphorylase Kinase; domain 1 506 621 - -
Vimu7g01195 852 Pfam Protein tyrosine and serine/threonine kinase 550 842 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01195 Vimu-Chr7 11481312 11483870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01195 70 847 Receptor kinase-like Gene Family AT5G07280 32.455 7.19e-115 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vimu7g01195 PK_Tyr_Ser-Thr 2.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01195 - - gmx:100797738 1494.95