Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01188 ATGAAACAAAACCTATCATACTATGATGGAGACACGTGCCATGCGGAAAATTTCCGAAAATGGAAAATAACAGTAATTAAACTACCCGCTCTGCCGAATGAGAAATTGTGGTTCTCGAATCCATCGCGTGGGATAAGGGTAGTGAAGCCTGAATCTGAAGCTTCGCGGACGTTGGCTATGCTCCGCAAATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGAGAGAGTTCACGTTTTCGATTGCTGCTTCACCACGGATACATGGAAAGAAGGGAATTACAATTACAAAGAATACATGGACGGGATAGTTGGTCAACTTAAGGAGAACTCGCTTGATGCTTCGATTCTTATTTTCAATTTTCGCGAGGAAGGTACCGAGAGTCAGATGGCAAGTATCATGTCTGAGCATGACATTACTATCATGGACTATCCTTTGCACTACCAAGGTGTTCCCGTGCTAAAAATGGAGCTCATCCACCATTTTCTGAGGTCTAGTGAAAGCTGGCTCTCGCTTGGGCAAAATAATGTGTTGCTGATGCATTGTGAACCTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTATAGAAAGGCTTATACTGGGGAGCAGAGGACTCTCGATATCGTTTACAGGCAGGCTCCTCACGAGCTTTTGCATTTGTTGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTGCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTATGTTGGACTGCATCATTCTCAGACTCTTCCCAAACTTTGACAGTGAAGGTGGTTGTCATCCCGTGTTTAGAATTTATGGACAAGATCCCTTTGATGCTGATAAAGTTCACAAAATGTTGTACTCAACGCCAAAAAGAAGCAAAAAGGTTGGGGCCTTTAAGCAGGGAGAGTGTGAACTTATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTTGTCATTGAGACTATTAACTTTAATGGTGACATGGAGCGTGAAAGGATGATGTTTCGAATCGTGTTTAACACATCCTTTGTTAGATCTAATATTTTGATGCTTAACCGGGATGAAATTGACATTTTATGGGATGCTAAAGATCACTTTCCAAACGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCAATAGTTGTTGCCGATAGGACCTCATGCTTTGAGGAGAAGGATGGACTACCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTAGACTGGATGAACCCTAAGGCAGATGTTGCCCTAAATGCTCTCCAACTTATAAGTGATTCAACTATGAATGATAGCTTAGATGAAAAAGATCCTAGAACGCCCCAAGGGAATTTGAATGAAGAGGTACGGTCTTCATTCTCAACCAAGACATCCCCAGTTACAGATATGAGTAGAAAAGAGGACAATACCAACAAGTTCGAGGGTATTCCGCAGCAACCTAGTACACCTAACAATATTTGTCAAGAGTCAACCAGATCTGCTAAAAGGACCTCGGAATCCAATAAATGTCCAACAAGACCTACAAATCTTGAAATAAAACAGCAATCACCTCATCCTGCCGTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTGAGGCCTCAATCCACTAGTGCTAAAGAAGCTCATGATTCTCCTCACCAAACAGAATCGCCCCCTTCTTATTATGTTGTGCCTTTGCAATCAAAACAGCAATCACAAGACAGAAGTCATTCATCTATTTCTATCCCTACACCTGACACCCAATTGTCATCTACTTTTCATAGCAAGTCACTGGCTGACACCATTTCCTGTCCTTCAGCTTCAACAATTACTTCGACCCAAGCATCTCCTTCACTTTCTTCCAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTACCCCTTCACGACCTCCAACTCCGCCTCCTCCGCCCACTCCTCCACTAAATGATCATAGACGAGTTCGAGCTACACCACCTCCTCCACCACCACCTCCTCCTATTCCTCCAAAAAAAGAACTACATGTTAAAGCTGGACCCCATCCTTCTCCTCTATCACATATGAATGTGGAGCCACAGGTTAGAGATGGACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTAAACCTCCTTGTCTCTCTGGGCAAGTTGCAGGTTTTACTATAGTACCACCTCCTCCTCCACCTCCACTTTCAAGTGAAGTACTTTACTCAAATTGCACTAATTCATCATTGCAAAAATCTCTAGCTCCTTCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCCGGGGCACCTGCCCCTCCCCCTCCTCCTGGGGTACCTTCCCCTTCCCCTCCCCCTCCTCCCAGGGCACCTGCCCCTCCCCCTCCTCCGAGGGCACCTGCCCCTCCCTCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGGGCACCTGCTCCTCCCCCTCCTCCTGGTGCACCTGCTCCTCCTCCTCCTCCTGGAGCACCTGCTGCTCCACCTCCTCCAATGCCCTTTGGTAAAGGAGGTCTGAAATCAGGCAGTCCTTTTCCAGGATCTCATTCTGTGAACGCTCGATCTAGTTCACCAACTAACTTGAAGGGAGTTTTATCGCGAACAATTAACTCAAAGAATAACACAAAAAGGTTGAAGCCTTTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGACACCGAAGTCTGGTGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGAATCTCTTCTCAGCAGCAGTCCCAACTTCAGGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAGCTGGGCCTAAATCTGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCCCAAGTGAAAGTTCCGTTGCACGATTTAATGACCTCAGTACTAACACTGGAAGAGTCAGCACTGGACTCTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAAATGGAATTACTCAAGGGTTATAACGGGGAAAGGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGGTTATTGTGAATGCTGCTTCAGAAGAGGCATGGAATTCGGTCAAACTAAAGAGAATTATGCATACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGATTTGAAATCAGCAATAGAGGCTGACTGTGTTGATGCAGCTGTGGGATCTTACTGCAGTGTAGTGATAGGTTCTGCTATTGGATTCAGATTGGATAGCCTTCTTAAACTAACCGAGACGCGGGCACGGGACAAAAAGTTGACTCTTATGCATTATCTTTGTAAGGTGCTAGTTGACAAACTGCCGGAAGTCTTAGACTTCTCCAACGATCTTTCTGACCTAGAGCCAGCAGCAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTAATACAGGAACTCTCAACTGCTGAAAGTGATGGGCCTATATCAGAAACTTTCCGCAAGAAACTGAAAGAGTTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCACTAGCTTCACTATATTCAACCGTGGGTAGGAACGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAGCAAGTCGCGTCAACTTTGCTCAACTTTACCAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAACTTGAAATGAAGAAAACTGAAAATGAGAAAAAGAAATGTGAATCAGAAAGGATTTTACCTACACCTATCCCGACTGGCAATGTCAAATAG 4020 0.449 MKQNLSYYDGDTCHAENFRKWKITVIKLPALPNEKLWFSNPSRGIRVVKPESEASRTLAMLRKLFFRKPPDGLLEICERVHVFDCCFTTDTWKEGNYNYKEYMDGIVGQLKENSLDASILIFNFREEGTESQMASIMSEHDITIMDYPLHYQGVPVLKMELIHHFLRSSESWLSLGQNNVLLMHCEPGGWPVLAFMLAALLIYRKAYTGEQRTLDIVYRQAPHELLHLLSPLNPIPSQLRYLLYVSRRNVALDWPPLDRALMLDCIILRLFPNFDSEGGCHPVFRIYGQDPFDADKVHKMLYSTPKRSKKVGAFKQGECELIKIDINCHIQGDVVIETINFNGDMERERMMFRIVFNTSFVRSNILMLNRDEIDILWDAKDHFPNDFRVEILFSEMDAAIVVADRTSCFEEKDGLPMEAFAKVQEIFSHVDWMNPKADVALNALQLISDSTMNDSLDEKDPRTPQGNLNEEVRSSFSTKTSPVTDMSRKEDNTNKFEGIPQQPSTPNNICQESTRSAKRTSESNKCPTRPTNLEIKQQSPHPAVSSTDTSFSPRTPPLRPQSTSAKEAHDSPHQTESPPSYYVVPLQSKQQSQDRSHSSISIPTPDTQLSSTFHSKSLADTISCPSASTITSTQASPSLSSKNVDEIPPIKTRIESTPSRPPTPPPPPTPPLNDHRRVRATPPPPPPPPPIPPKKELHVKAGPHPSPLSHMNVEPQVRDGPSPPLSLKEEQPTRFKPPCLSGQVAGFTIVPPPPPPPLSSEVLYSNCTNSSLQKSLAPSPPPGAPAPPPPPGAPAPPPPPGVPSPSPPPPPRAPAPPPPPRAPAPPSPPGAPAPPPPPGAPAPPPPPGAPAPPPPPGAPAAPPPPMPFGKGGLKSGSPFPGSHSVNARSSSPTNLKGVLSRTINSKNNTKRLKPLHWLKLSRAVQGSLWAETPKSGEASKAPEIDMSELENLFSAAVPTSGIAKKSNVQSSAGPKSEKVQLIEHRRAYNCEIMLSQVKVPLHDLMTSVLTLEESALDSDQVENLIKFCPTKEEMELLKGYNGEREKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLVIVNAASEEAWNSVKLKRIMHTILSLGNALNQGTARDLKSAIEADCVDAAVGSYCSVVIGSAIGFRLDSLLKLTETRARDKKLTLMHYLCKVLVDKLPEVLDFSNDLSDLEPAAKIQLKFLAEEMQAINKGLEKVIQELSTAESDGPISETFRKKLKEFLGSAEAEVRSLASLYSTVGRNVDALILYFGEDPSRCPFEQVASTLLNFTRMFNKAHEENCKQLELEMKKTENEKKKCESERILPTPIPTGNVK 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01188 1339 Gene3D Formin, FH2 domain 900 1309 IPR042201 -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 761 777 - -
Vimu7g01188 1339 Pfam C2 domain of PTEN tumour-suppressor protein 259 395 IPR014020 -
Vimu7g01188 1339 Gene3D Protein tyrosine phosphatase superfamily 70 250 IPR029021 -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 496 614 - -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 628 645 - -
Vimu7g01188 1339 ProSiteProfiles Formin homology-2 (FH2) domain profile. 902 1324 IPR015425 -
Vimu7g01188 1339 Pfam Formin Homology 2 Domain 1147 1298 IPR015425 -
Vimu7g01188 1339 Pfam Formin Homology 2 Domain 906 1123 IPR015425 -
Vimu7g01188 1339 ProSiteProfiles C2 tensin-type domain profile. 258 396 IPR014020 -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 879 907 - -
Vimu7g01188 1339 PANTHER FORMIN-J 814 1324 - -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 628 907 - -
Vimu7g01188 1339 Coils Coil 1299 1326 - -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 467 483 - -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 452 614 - -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 1320 1339 - -
Vimu7g01188 1339 Coils Coil 1205 1229 - -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 778 869 - -
Vimu7g01188 1339 SMART it6_source 659 1339 IPR015425 -
Vimu7g01188 1339 SUPERFAMILY Formin homology 2 domain (FH2 domain) 977 1326 - -
Vimu7g01188 1339 MobiDBLite consensus disorder prediction 658 696 - -
Vimu7g01188 1339 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 133 246 IPR029021 -
Vimu7g01188 1339 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 261 396 IPR035892 -
Vimu7g01188 1339 Gene3D - 255 399 - -
Vimu7g01188 1339 SMART PTEN_C2_2 256 395 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01188 Vimu-Chr7 11438750 11451719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01188 58 448 Protein tyrosine phosphatase (PTP) family AT5G58160 64.885 5.46e-179 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01188 - - var:108329436 1426.77