Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01181 ATGCAACCTTGTAGTAGAGAAATGCAAGGCGCTAACAATAACTCTGTCTTTAACAATGGTGGTAACAATCAGCAACAGATTCACTTTGATGCAACTTCAAACGAGGATTTCCTCAAGCAAATGCTCTCCAACCTCCCTTCGTCTTCTCCATGGACACTCGACCCCAAACACAACCCCTTGTGGGACCCTAATTCCGACGAAACCACGCCGGAAAACAACGTCGTTTTCCCCTACGACCTCGAACAGGCCAACTTGGCCTCCAAGTTTCGTAACCACCAGATCACCGATGACAAAGCCTCCGCTCTCATGCTCCAACACCACCATCAACTCCTCCTCTCCTCCGCCGCTGCCAATTCCCCCCTCCTCCAAATGCCCGTCTCCTCTCTTAACGACGTCGTTCACGCCTCCTCCTTTAAATCTCCTGCTCCAAACGCTGACCCTTCTTCTGTTCAACCTCTCTACAACGCCTTCTCCGCCTCTCTCCAAGGCGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCCCAGCAGGGGCAGAGTTTTGGAGCCTCGGCTCCGGCTACTGGTGGTGGCGGTGGTTCCGGGCAGCCGAAGCAGAGGGTTAGAGCGAGGAGAGGTCAAGCCACCGACCCACACAGCATCGCCGAAAGGGTACGTTTCTCTGGCTTCGCGAAAACGTGTTTCGACGGTGATTTCATGTGGCCTGACAGAATCGTTTTGATTTTTGATCTTTTGACGTTTGGTTCTATTGGTGAGGAGATATGGCCATTGTCTTACTTTTGTTGTTCTGAAGCTGGGGAGAGAATCGCAGAGCGAATGAAGGCTCTGCAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCTTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGAGGTGCAGCGGCTGTGGCACCCCTTGTTGCTGATATATCTTCTGAGGGAGGCGCTGACTGCGTTCAACCAAAACGCAACAACACCAACGGAAACTCAAACGGCAACCATGCTTCTTCAAACGACACCCTAACCACGACGGAGCAACAGGTGGCCAAGCTCATGGAGGAAGACATGGGATCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTTATGCCGATTTCCCTGGCCACCGCCATCTCCAAAGCCACGTGTCACACCAGAAACCCTTTCACCAACGCTGATGGGCCCTCCTCTCCCGGAATATCCGCGCTCACCCTGCACTCATCCACTCTCAGTAACGGCCTCGTCAAAGACACCGCCTCCGTTTCCAAGTCCTGA 1335 0.5296 MQPCSREMQGANNNSVFNNGGNNQQQIHFDATSNEDFLKQMLSNLPSSSPWTLDPKHNPLWDPNSDETTPENNVVFPYDLEQANLASKFRNHQITDDKASALMLQHHHQLLLSSAAANSPLLQMPVSSLNDVVHASSFKSPAPNADPSSVQPLYNAFSASLQGAAQPSNQTHHFQLPQQGQSFGASAPATGGGGGSGQPKQRVRARRGQATDPHSIAERVRFSGFAKTCFDGDFMWPDRIVLIFDLLTFGSIGEEIWPLSYFCCSEAGERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGADCVQPKRNNTNGNSNGNHASSNDTLTTTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHTRNPFTNADGPSSPGISALTLHSSTLSNGLVKDTASVSKS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01181 444 MobiDBLite consensus disorder prediction 1 26 - -
Vimu7g01181 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 314 IPR036638 GO:0046983
Vimu7g01181 444 Gene3D - 269 319 IPR036638 GO:0046983
Vimu7g01181 444 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 398 - -
Vimu7g01181 444 MobiDBLite consensus disorder prediction 180 212 - -
Vimu7g01181 444 MobiDBLite consensus disorder prediction 336 360 - -
Vimu7g01181 444 Pfam Helix-loop-helix DNA-binding domain 270 305 IPR011598 GO:0046983
Vimu7g01181 444 SMART finulus 266 310 IPR011598 GO:0046983
Vimu7g01181 444 MobiDBLite consensus disorder prediction 337 360 - -
Vimu7g01181 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01181 Vimu-Chr7 11380888 11384036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01181 185 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 53.307 7.43e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g01181 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01181 - - gmx:100801457 455.292