Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01172 ATGCACCGAAGAGCCCCATTCCCTCGTCTCCTCCTGGATAATGTCGCATGTATGAGAAATGCACAGCAAGTTCTGCGTCATGTGAATGTGTCTCTTCATGATGGAGGGGCGCTTGTGCTAACAGGCGCAAATGGCTCGGGGAAGACAACTTTCCTGCGTATGTTAGCTGGGTTTTCTCGTCCTTCTGCTGGCCAAATCCTTTGGAATGGCCATGACATACAACAATCTGCAATATTCCATCAGTATAAGCTTCAACTTAACTGGCTCTCTCTCAAGGACGCCATTAATGATAGGTTCACAGTTCTCAACAATGTACAATGGTTTGAACTTCTTGAGAACAAGGAAGGGAAGGCTTTGGCTGCGGTGGAGTTGATGGGACTGGGAAGATTAGCTAATGAAAAACCAAGGATGCTTTCTATGGGTCAGCGTAAAAGGCTACAACTTGCCAGGTTGCTCGCAATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCGGTTGCATTAGACGATGAGGGAGTAAAGTTGCTTGAGTATATCATCGCAGAACATAGGAAACACGGAGGAATTGTGATAGTGGCGACTCATCTACCCATTGAGATAGAAGATTCCATGGTTTTGAAACTTCCACCAAGGTTTCCCAGGAGGATGACCCATGCGGATATGCTTGATCGGGTGGATATCAGTTAA 687 0.4658 MHRRAPFPRLLLDNVACMRNAQQVLRHVNVSLHDGGALVLTGANGSGKTTFLRMLAGFSRPSAGQILWNGHDIQQSAIFHQYKLQLNWLSLKDAINDRFTVLNNVQWFELLENKEGKALAAVELMGLGRLANEKPRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKHGGIVIVATHLPIEIEDSMVLKLPPRFPRRMTHADMLDRVDIS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01172 228 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 6 221 IPR005895 GO:0017004|GO:0022857
Vimu7g01172 228 NCBIfam heme ABC exporter ATP-binding protein CcmA 12 208 IPR005895 GO:0017004|GO:0022857
Vimu7g01172 228 SMART AAA_5 34 222 IPR003593 GO:0016887
Vimu7g01172 228 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 10 227 IPR003439 GO:0005524
Vimu7g01172 228 Pfam ABC transporter 25 165 IPR003439 GO:0005524
Vimu7g01172 228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 199 IPR027417 -
Vimu7g01172 228 Gene3D - 6 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01172 Vimu-Chr7 11328981 11331302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01172 23 177 Calmodulin-binding Proteins AT2G36910 27.586 4.51e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01172 - - gmx:100796586 411.379