Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01168 ATGGTGGAAGAAGACCATTTTCCTGTGGGTTTGCGTGTACTTGCGGTTGATGACGACAGAACTTATCTCACAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATAATGTTACTGCAACTACTCAATCAGTGAAGGCACTAGAAATGCTGAGGAAAAACAGAAACGAGTTTGACCTTGTTATCAGTGATGTGAATATGCCAGAAATGGATGGGTTTAAGCTGCTTCAGCAAGTGGGACTTGAGACGGACCTACCCGTTATCATGTTGTCAGGGTACGGTGATAAAGAACGGGTCATGAAAGGAGTCATATATGGTGCTTGTGACTTTTTAACCAAACCAGTTCGAATTCAAGAGTTACAGAACATATGGCAACATGTAGTGCGGAGGAAGATTGACAGCAAGGATAAGAATAAGACTGCAAGTGAGGAAAAAGACTGTAGTATGGCATGTAAGTTTGCAAATGAGGAGGAACCATGCATTGTTGCTGGGGAATGTAGTCAAGCCTTTGCACCAAAAACTAAAGCTAACCAGATTATAAAAGTGGATCATAAAAGGAAAGAACGCTGTGAGGCTGAGGAGGAAATAGAAGAAGATGACAAAGAGAACGATGAACCCTCCAATCAGAAGAAATCTCGTTTAGTTTGGGATACTGAGTTGCACAACAAATTTCTTGCTGCCATTAATCAGCTGGGAATTGACAAGGCCTTCCCCAAGAAAATACTTGACTTGATGAATATTGATGGACTTTCAAGAGAAAACGTAGCAAGCCATCTCCAGAAATTCAGACTCGGTCTCAAAAAGCCCAATCCTTACCACCGTATGGGTTCAGTTGATTGCTTTCGCACTTCATCTGAATCAGGAGCTATGTTGAGCACCACATTACCTTCATATGCATATGCACCTAGTGGAAGGTTTAGTTTGTTAAACTCTCCATCCTGCTTGAACACTAGAGGAATGAACTCATCTGCAATTGTTCAGGCTTCTCAGTCTCGAAACATTAACAGCAGCTCCATAAAAACACATGGAAACATGCACTCGTCTATGTTTTCTGCAAACCAAACCTCAAGCTTATTGCAGGGCATTCCAACATCAATGGAGGCTAACCAATTTAAGCCCAACAACTCAGCAGCTGGTATTAGGAGGTTTAATGCACTTGATCATTCAGCTGCACTTAAAGATTTCTCTAGTTTCTCGGAAAATATAGCCACTGTTAGAAATGCAGCCAATATATCTCTTCCTGGTCTCTCCAATAATCATTTACTTTTTCAAGGAATTTCCCAACTTAAACATCATTCTGAAGCATTCAGAAATCATTCATCTTTTGGAGCTGCTGCTGTGAAAACACAATCTTTTTATCCAAACTCCTGTGGTTATTCTAAGATGGGGGATGGTTATAATAATAAAAGGTGGCAGGAAGCTGCTCCGATATCTACCTGTCCTTCAAATACTTCTGCTGTCAGTAACGTTTTCAATAATGATCAACCTCTTCAGCATAACTTTAAGTTGTCCTCATCCAATTTTTGCAGTAGGAACAGTCCAGTTGGTTTTTCTTCCAGTGTTCCTTTGGAGGATGATGTCCTAGGTGAGATGCTGCACCAAGAAGGCTTACTAGGGAATATCTTACTAGCTTCGTGTTACACCCAGAATAACCAGGGAGGATGCAGCAAAGACACAAGTCAAACCTTCAATTCCATAAATCCTGTCATTTCTCCTAATGGAGGCACTAGTTCCTTGGGACATAGCTATGAACAAAATAGTACAGTTGACAATAACAGAATTGATGCATCTTTGGTTGGCCAAATGAATGGGGTAAATCCATCAATCACAGTGTGTAGTGAAGGTGAGAATTTCTATTCAATGAAGTCAAATGATGCGTATGTTTTGCAGAATAATTTGGAGTCCCTGGATGACATATTGAATGGAATAGACGAACAGATATTTGATCAAATCTTTCTTCTTGCAATATATCAAGTTCTTTTAATCCTGCCCTGA 1992 0.4041 MVEEDHFPVGLRVLAVDDDRTYLTVLENLLRKCQYNVTATTQSVKALEMLRKNRNEFDLVISDVNMPEMDGFKLLQQVGLETDLPVIMLSGYGDKERVMKGVIYGACDFLTKPVRIQELQNIWQHVVRRKIDSKDKNKTASEEKDCSMACKFANEEEPCIVAGECSQAFAPKTKANQIIKVDHKRKERCEAEEEIEEDDKENDEPSNQKKSRLVWDTELHNKFLAAINQLGIDKAFPKKILDLMNIDGLSRENVASHLQKFRLGLKKPNPYHRMGSVDCFRTSSESGAMLSTTLPSYAYAPSGRFSLLNSPSCLNTRGMNSSAIVQASQSRNINSSSIKTHGNMHSSMFSANQTSSLLQGIPTSMEANQFKPNNSAAGIRRFNALDHSAALKDFSSFSENIATVRNAANISLPGLSNNHLLFQGISQLKHHSEAFRNHSSFGAAAVKTQSFYPNSCGYSKMGDGYNNKRWQEAAPISTCPSNTSAVSNVFNNDQPLQHNFKLSSSNFCSRNSPVGFSSSVPLEDDVLGEMLHQEGLLGNILLASCYTQNNQGGCSKDTSQTFNSINPVISPNGGTSSLGHSYEQNSTVDNNRIDASLVGQMNGVNPSITVCSEGENFYSMKSNDAYVLQNNLESLDDILNGIDEQIFDQIFLLAIYQVLLILP 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01168 663 Gene3D - 206 267 - -
Vimu7g01168 663 SUPERFAMILY CheY-like 10 133 IPR011006 -
Vimu7g01168 663 SMART REC_2 11 123 IPR001789 GO:0000160
Vimu7g01168 663 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Vimu7g01168 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 329 IPR045279 GO:0009736
Vimu7g01168 663 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Vimu7g01168 663 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Vimu7g01168 663 FunFam Two-component response regulator 206 268 - -
Vimu7g01168 663 PIRSF RR_ARR_type-B 1 652 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu7g01168 663 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Vimu7g01168 663 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Vimu7g01168 663 Gene3D - 11 147 - -
Vimu7g01168 663 CDD REC_typeB_ARR-like 13 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01168 Vimu-Chr7 11311302 11314047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01168 5 427 Response Regulator Gene Family AT2G25180 41.950 1.81e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g01168 Response_reg 1.5e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01168 - K14491 vun:114177568 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01168 7 11311302 11314047 Vimu7g01168 7 11311302 11314047 ECH