Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01161 ATGAAAGTAGCAATGACAGATTGTTTTGCACTTTTCAAAGAAATTGCTCCTGTAGCAAATAGACAAGCATACCTAAATGTGGATTTTCTTGAATCCATACATCCAACACAGTTTGAATCCGATTTGACAGATGGCCCAAAGCCCACAAGTACTAAAAGGACAGAAGCGGCCCAATCCACAGGACCGTGTGGTGACTCTGTAAAAGACTGGAACTGGCTAGGGTTTTCTTTAGTTTCCAGAGAAGTGCAGCGGCTTGTTTTTGCGTTTGATCGTCCACAGCGAAAATGGATCAAGAAGAAGCTTGCCAAGAAGATGAGGCAGAACAGGCCCATCCCTTACTGGATCCGCATGAGGACCGACAACACTATCAGGTATAATGCAAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGATTTTAG 420 0.4595 MKVAMTDCFALFKEIAPVANRQAYLNVDFLESIHPTQFESDLTDGPKPTSTKRTEAAQSTGPCGDSVKDWNWLGFSLVSREVQRLVFAFDRPQRKWIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01161 139 Pfam Ribosomal L39 protein 97 137 IPR000077 GO:0003735|GO:0005840|GO:0006412
Vimu7g01161 139 SUPERFAMILY Ribosomal protein L39e 95 138 IPR023626 -
Vimu7g01161 139 ProSitePatterns Ribosomal protein L39e signature. 118 134 IPR020083 GO:0003735|GO:0005840|GO:0006412
Vimu7g01161 139 FunFam 60S ribosomal protein-like L39 91 139 - -
Vimu7g01161 139 MobiDBLite consensus disorder prediction 38 64 - -
Vimu7g01161 139 Gene3D Ribosomal protein L39e 92 139 IPR023626 -
Vimu7g01161 139 PANTHER RIBOSOMAL PROTEIN L39E 97 139 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01161 97 139 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 93.023 5.46e-24 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01161 K02924 - egr:120290771 95.9005