Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01159 ATGTCCTCCGACATTTCGTATGAAGACCTCAAAAACGAGAATGTGGATCTTGAACACATTCCTGTTGAAGAGGTTTTCAAGCAACTGAAATGTACCAAAGAGGGTCTCACATCTGCTGAAGGAGAAAAGAGGCTTCAAATATTTGGTCCCAACAAGCTAGAGGAGATAACAGATAGCAAATTTCTTAAGTTCTTGGGTTTTATGTGGAATCCACTTTCATGGGTCATGGAAGCTGCTGCTGTCATGGCCATTGCATTAGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCCTTGGTATTGTCGTGTTGCTGCTCATCAATTCTACCATTAGTTTCATTGAGGAGAACAACGCAGGCAATGCTGCAGCTGCTTTAATGGCTGGTCTTGCACCCAAAACAAAGGTGTTGAGGGATGGAAAATGGAGCGAGGAGGAAGCTGCAATTTTGGTGCCAGGAGATTTGATCAGCATCAAGTTGGGAGATATTGTCCCAGCTGATGCCCGTCTTTTGGAGGGAGATCCCCTCAAGATTGACCAGTCTGCCCTCACTGGTGAGTCCTTGCCTGTCACCAAGAATCCTGGTAGTGAGGTCTTCTCTGGTTCCACCTGCAAACAAGGTGAAATAGAAGCTGTTGTCATTGCCACCGGCGTTCACACCTTCTTTGGCAAGGCTGCACATCTTGTGGACAGCACCAACAATGTTGGTCACTTCCAGAAGGTGTTGACTGCCATTGGAAACTTCTGTATCTGCTCAATTGCTCTGGGAATGTTGATTGAGATTATTGTGATGTATCCCATCCAGCAAAGGTCTTACAGAGAGGGCATTGATAATTTGTTGGTTCTTCTCATTGGAGGTATCCCAATTGCCATGCCAACTGTCCTGTCTGTCACCATGGCCATTGGGTCTCACCGTTTGTCTCAGCAAGGAGCCATCACCAAGAGGATGACAGCCATTGAAGAGATGGCTGGCATGGATGTTCTCTGCAGTGACAAGACCGGAACCCTCACTCTTAACAAGCTCACTGTGGATAAGAACTTGATTGAGGTGTTCCCCACTGGCATGGACAAGGATACCCTTGTCTTGTATGCTGCCAGGGCTTCCAGGACTGAAAATCAGGATGCCATTGATGCTTCAATCGTTGGAATGCTGAGTGATCCCAAGGAGGCAAGAGCAGGAATCAATGAGGTGCATTTTTTGCCCTTCAATCCTGTGGACAAGCGCACAGCCATCACTTACATTGATGCCCAGGGCAATTGGCACAGAAGCAGCAAGGGTGCTCCTGAGCAAATTATTGAGCTCTGTGGACTCAAGGGAGAGATTTTGAGAAAGGCCCATAAAGTCATTGATGAGTATGCTAACCGTGGTCTGCGTTCATTGGGTGTTTCACGCCAGACTGTTTCGGAAAAGAGCAAGGAGAGTGAAGGAGACCCCTGGGAGTTCTTGGGTCTCTTGCCCCTCTTTGATCCTCCAAGGCACGATAGTGCTGAGACTATTCGACGTGCTCTTGACCTTGGAGTCAATGTTAAGATGATCACTGGTGATCAACTTGCCATTGGAAAAGAAACCGGTCGCAGGCTTGGCATGGGCACCAACATGTACCCTTCATCCTCTCTTCTTGGTGACTGCAAGGACCCCACCATTGCCTCAATCCCAATTGATGAACTCATTGAGAAGGCTGATGGATTTGCCGGAGTCTTCCCCGAGCACAAGTATGAGATTGTGAAGAGGTTGCAAGATAGAAAGCATATTTGTGGAATGACTGGAGATGGTGTGAATGATGCCCCAGCACTGAAGAAGGCAGACATTGGTATTGCTGTTGCCGATGCCACTGATGCAGCGAGAAGTGCCTCCGACATTGTCCTGACCGAGCCCGGACTAAGTGTGATCGTGAGTGCTGTTTTGACCAGCCGAGCCATCTTCCAGAGGATGAAGAATTACACAATCTACGCTGTTTCCATCACCATCCGTATTGTGTTTGGATTCATGCTTGTAGCTCTAATATGGAAATTCGACTTCTCCCCTTTCATGGTCCTCGTCATCGCCATCTTGAACGATGGAACCATCATGACCATCTCCAAGGATAGGGTGAAACCTTCTCCTCTTCCCGACTCATGGAAGCTGAAAGAAATATTCGCCACTGGTATTGTTCTTGGAGCTTACATGGCCATCATCACTGTTGTCTTCTTCTTTTTGGTTCATGACACCGATTTCTTCACTAGAACCTTTGGTGTTAAGCCAATTGCAGACAGTGAGGAGCAGCTTAACTCAGCCCTGTACCTTCAAGTGAGTATCATTAGCCAAGCACTCATCTTCGTCACCAGGTCAAGGAGTTGGTCTTATGTTGAACTCCCTGGAATTTTGCTTATCACAGCCTTCTTTGCTGCTCAATTGGTGGCCACTGTGATTGCTGTGTATGCACACTGGGACTTTGCCAGGATCAATGGAGTTGGTTGGGGATGGGCAGGAGCAATATGGGTATTCAGCATTGTTACCTACATTCCTCTTGACATCCTCAAGTTCCTCATCCGGTTGGGACTGTCAGGCAAGGCTTGGGACAACATGCTTGAGAACAAGACTGCTTTCACTACCAAGAAAGACTATGGAAAAGGAGAAAGAGAAGCTCAATGGGCCATGAATCAGCGCACACTTCATGGTCTCCAAGTAGGAGAAACCAAGGTCAACCACGAGCAGTCTGAAATAGCAGAGCAAGCTCGAAGACGTGCTGAGGCTGCAAGGTTGAAGGAGCTCCACACACTGAAGGGACATGTTGAATCTGTGATGAAGTTGAAGGGCATTGATATTGATACCATTCAACAACACTACACTCTCTAA 2838 0.4753 MSSDISYEDLKNENVDLEHIPVEEVFKQLKCTKEGLTSAEGEKRLQIFGPNKLEEITDSKFLKFLGFMWNPLSWVMEAAAVMAIALANGGGKPPDWQDFLGIVVLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGSEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIALGMLIEIIVMYPIQQRSYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFPTGMDKDTLVLYAARASRTENQDAIDASIVGMLSDPKEARAGINEVHFLPFNPVDKRTAITYIDAQGNWHRSSKGAPEQIIELCGLKGEILRKAHKVIDEYANRGLRSLGVSRQTVSEKSKESEGDPWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDCKDPTIASIPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGAYMAIITVVFFFLVHDTDFFTRTFGVKPIADSEEQLNSALYLQVSIISQALIFVTRSRSWSYVELPGILLITAFFAAQLVATVIAVYAHWDFARINGVGWGWAGAIWVFSIVTYIPLDILKFLIRLGLSGKAWDNMLENKTAFTTKKDYGKGEREAQWAMNQRTLHGLQVGETKVNHEQSEIAEQARRRAEAARLKELHTLKGHVESVMKLKGIDIDTIQQHYTL 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01159 945 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Vimu7g01159 945 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Vimu7g01159 945 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Vimu7g01159 945 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Vimu7g01159 945 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Vimu7g01159 945 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Vimu7g01159 945 Gene3D - 327 626 IPR023214 -
Vimu7g01159 945 Gene3D - 133 217 - -
Vimu7g01159 945 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu7g01159 945 SFLD Haloacid Dehalogenase 312 641 - -
Vimu7g01159 945 FunFam Plasma membrane ATPase 483 637 - -
Vimu7g01159 945 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu7g01159 945 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Vimu7g01159 945 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Vimu7g01159 945 FunFam Plasma membrane ATPase 342 489 - -
Vimu7g01159 945 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 846 IPR023298 -
Vimu7g01159 945 Gene3D - 896 945 - -
Vimu7g01159 945 Gene3D - 342 489 IPR023299 GO:0000166
Vimu7g01159 945 FunFam Plasma membrane ATPase 133 217 - -
Vimu7g01159 945 NCBIfam HAD-IC family P-type ATPase 564 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01159 945 NCBIfam HAD-IC family P-type ATPase 102 349 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01159 945 Gene3D - 95 816 - -
Vimu7g01159 945 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Vimu7g01159 945 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Vimu7g01159 945 FunFam ATPase 4 plasma membrane-type 574 816 - -
Vimu7g01159 945 PANTHER CALCIUM-TRANSPORTING ATPASE 19 884 - -
Vimu7g01159 945 SFLD p-type atpase 312 641 IPR044492 -
Vimu7g01159 945 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Vimu7g01159 945 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01159 945 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01159 945 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01159 945 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01159 945 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu7g01159 945 Pfam E1-E2 ATPase 132 309 - -
Vimu7g01159 945 SUPERFAMILY HAD-like 326 636 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01159 Vimu-Chr7 11256610 11261322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01159 1 945 Primary Pumps ATPases AT3G42640 84.388 0.0 1637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01159 K01535 - gmx:100798717 1708.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01159 7 11256610 11261322 Vimu7g01159 7 11256610 11261322 ECH