Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01152 ATGTCAGGGTGGGACGAAGGAGCCGTCTACTACAGCGACCTAGCGCTCTTCGGAGACGACGGTGTCGGCGCCCGTGGGGAAGCCGGCACCCGTGGGGAGGCCGGCACCGATTCGAACCACTCCCTCCTCCAGAAATTCAAGGAATTCATCCGAAGCTTCGAGACCGCCAACAACGTCTTCCCTTACAGAGAGAGCCTACTCCACAACCCTAAGTTCCTTCTAGTCGATATGGGAGATCTCGACACGTTCGACTCCGACCTTCCTGCCAAAATCCGCTCTTCCCCCTCAGATATTTTGCCCCTGTTCGAAACGGCAGCGGCGCAGGTTCTCGTGAGTTTGAAGACCAAGGTTGCTGGAGATACTGGAGCCATGGAGGATCCTATTCCCGGTGATGTTCAGATTTTGCTCACCTCCAAGGAGGATCCGATTTCTATGAGATCGCTTGGGGCTCAGTACATATCGAGACTGGTTAAAATCGCCGGGATTACTATTGCTGCCTCCAGGACTAAGGCAAAGGCCACTTATGTTACCCTGATATGTAAAAACTGTAAGAAGGGGAAGCAGGTTCCATGTCGGCCAGGACTTGGAGGAGCCATTGTTCCTCGATCCTGTGATCATGTTCCTCAGCCTGGAGAAGAGCCTTGCCCAATTGATCCCTGGCTTGTGGTCCCTGACAAGAGCAGATATGTTGACCAACAAACTTTGAAGCTGCAGGAAAATCCAGAGGACGTTCCACCTGGAGAGCTTCCTAGAAACCTGCTTCTCTCTGTTGATCGTCATCTGGTTCAGACAGTAGTACCTGGCGCAAGATTGTCAATCATGGGAATTTATAGTGTCTACCAGGCTTCTAACTCTTCTACATCCCACAAAGGAGCTGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGCATAGAAGAAACAAACGAGACCCAGTCTCGTGGTCCAGCTGCATATACACAAGACGAGATAGAAGAATTTAAAAAATTTGCTGCCGAACCTGATGCGTATAAAAATATCTGCTCCAAAATTGCTCCATCTATATTTGGTCACGATGATGTCAAAAAGGCTGTAGCCTGTCTTCTGTTTGGAGGGTCAAGAAAGCATTTGCCCGATGGAGTCCGGTTAAGAGGTGACATCAATGTGTTGCTTCTGGGTGATCCATCTACAGCTAAGTCACAGTTTCTGAAGTTTGTTGAAAAGACTGCTCCTATTGCTGTTTATACTTCTGGGAAAGGTTCATCAGCTGCTGGCCTTACAGCTTCTGTAATACAGGATAGCAGTACGCGTGAGTTTTATCTTGAAGGAGGAGCCATGGTCTTGGCTGATGGAGGTGTTGTATGTATTGATGAGTTTGATAAAATGAGACCAGAAGATAGAGTTGCTATTCATGAAGCCATGGAACAGCAAACAATATCCATTGCCAAAGCGGGAATAACAACTGTTCTTAACTCACGGACTTCAGTACTTGCGGCTGCCAACCCTCCATCTGGACGTTATGATGATCTCAAGACTGCACAGGATAACATTGACTTGCAGACTACCATTCTTTCTCGGTTTGACTTGATTTTTATTGTGAAAGATGTCAGAATGTACAGTCAAGACAAGATAATTGCTAATCATATCATAAAGGTCCATGCATCGGCTGGACGGGCTGGTGCATTGATGGGTGAGAGCAAAACTTCTAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAAATGAATGCCACCCTCGCCTATCCGAATCTGCAACTACATTATTGCAGAATCATTATGTGAAAATCAGACAGGATATGAGGAAACAAGCGAATGAAACAGGAGAAGCTGCAGCAATACCGATAACTGTAAGGCAGCTGGAAGCAATTGTTAGGTTGAGCGAAGCACTTGCAAAGATGAAACTATCTCATCTTGCTACTGAGGAAAATGTGCAAGAAGCAGTAAGGCTTTTCACTGTGTCCACAATGGATGCAGCTAAGTCCGGGATAAACCAACAAATAAATCTTACACCTGATATGGCAAATGAAATAAAGCAAGCTGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCATATATCAGAAAGGAGGCTGATTGATGACCTTAGCAGAATGGGGATGAATGAGTCTATCGTGAGAAGAGCTCTTATAATCATGCACCAGAGGGACGAAATAGAGTACAAGAGAGAAAGACGTGTTGTATTTAGGAAGGCATGA 2226 0.4578 MSGWDEGAVYYSDLALFGDDGVGARGEAGTRGEAGTDSNHSLLQKFKEFIRSFETANNVFPYRESLLHNPKFLLVDMGDLDTFDSDLPAKIRSSPSDILPLFETAAAQVLVSLKTKVAGDTGAMEDPIPGDVQILLTSKEDPISMRSLGAQYISRLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHVPQPGEEPCPIDPWLVVPDKSRYVDQQTLKLQENPEDVPPGELPRNLLLSVDRHLVQTVVPGARLSIMGIYSVYQASNSSTSHKGAVAVRQPYIRVVGIEETNETQSRGPAAYTQDEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKHLPDGVRLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIQDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDVRMYSQDKIIANHIIKVHASAGRAGALMGESKTSKEENWLKRYLQYCRNECHPRLSESATTLLQNHYVKIRQDMRKQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAVRLFTVSTMDAAKSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALIIMHQRDEIEYKRERRVVFRKA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01152 741 FunFam DNA helicase 317 671 - -
Vimu7g01152 741 ProSitePatterns MCM family signature. 445 453 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vimu7g01152 741 Gene3D - 38 121 - -
Vimu7g01152 741 Gene3D - 317 675 IPR027417 -
Vimu7g01152 741 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 40 699 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 Pfam MCM AAA-lid domain 567 656 IPR041562 -
Vimu7g01152 741 Gene3D - 145 280 IPR012340 -
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein family signature 489 501 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 451 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein family signature 377 392 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein family signature 516 524 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein family signature 465 478 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 Pfam MCM P-loop domain 324 546 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 FunFam DNA helicase 37 125 - -
Vimu7g01152 741 Pfam MCM N-terminal domain 44 115 IPR027925 -
Vimu7g01152 741 FunFam DNA helicase 172 230 - -
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 146 161 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 172 184 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 575 590 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 296 308 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vimu7g01152 741 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 651 668 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Vimu7g01152 741 SUPERFAMILY Nucleic acid-binding proteins 45 302 IPR012340 -
Vimu7g01152 741 SMART mcm 141 658 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 657 IPR027417 -
Vimu7g01152 741 Gene3D - 172 230 - -
Vimu7g01152 741 Pfam MCM OB domain 145 280 IPR033762 -
Vimu7g01152 741 ProSiteProfiles MCM family domain profile. 336 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu7g01152 741 CDD MCM5 339 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01152 Vimu-Chr7 11197615 11202670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01152 1 741 Core DNA Replication Machinery Family AT2G07690 76.383 0.0 1176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01152 K02209 - gmx:100779483 1358.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01152 7 11197615 11202670 Vimu7g01152 7 11197615 11202670 ECH