Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01150 ATGTCGGACGGAGAGTCCTCCATTGTGGTGGGCGACCAACCCTCCATGGACCCTTCTTTAAGCCTCTCCGATCAACAACTGTCTCTCAGTCTTTCCCAAGTTGAACTTGACGATGACGACGCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTATATTTAGGGACAGGGTGTGGGAAAACTCATATTGCCGTGCTTCTTATGCATGAAATGGGCCATTTGATTCGGAAACCGCATAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCAGACTCTACTGATTTTAAGGTTGGAATTTTCTGTGGAAGTTCCAAGCGTTTAAAACGGCGTCAAGACTGGGAGCAGGAGATTGGACAACATGAGGTTCTTGTTATGACCCCACAAATATTACTGCACAACTTATCTCATTGTTTCATCATGATGGAAATGATTGCACTTTTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGAAATCATGAAAATTTTCTACAATAGTAATTCTTCAAAGGTTCCACGTATATTTGGCATGACTGCATCCCCTGTTGTTGGAAAAGGAGCTTCTAGTGAAGCAAATTTGGCAAGAAGCATCAACAGTCTTGAACATATGCTTGATGCTAAGGTTTACTCTGTTGAAGACAAGGAATTGAAATCATTTGTGACCACTCCTGTAATTAATATATATCATTATGCTTCAACTGCAAGTGGGGAAACTAGCATGTACTTGAAAATTGAAGAAATTAAACGCCAGTGCATAGCAACCCTTGGTAGAAGTTCAGAAGATCACCAGAAACGGATGAATACAAAGAAACTTCTGAACCGAATGCATGATAATGTGGTTTTCTGTTTACAGAATCTTGGCATTTGGGGAGCACTGCAAGCTAGTCATATTCTTCTTAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACACTTATCTTGCTCAGGTTGCTGAACTATTTACTTCACGGTGCATTAAAGGTGACAATGTATCTGATGATTTATCTTCTTCGGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTTTTACGACTCTTTGGGATACTTTCCACCTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATCGAATTGTGACTGTGAGATCCCTGTCATACATACTTCAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGCTGAAGAGTATGTCCCGTAAAACCATGAACGTGATTCTTGACAAGTTTCGTTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTTGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGTTTTGATCTTCCGGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCTGAATATGCGTTTTTGGTGGACAGTGGTAATAAGAAGGAGCTTGACATAATTGATGGTTTTGAGAAAGATGAATACCGAATGAATATGGAAGTTACTTTTCGAACATCTGATGAGACATTCATCATCCCTGAGGAAAAAATTTTCAGAGTTGAGTCGACTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGACCCCAAGCCAAATTTTTATTTCTTAGATGATTCAGAGGGAATTGTTTGCCACATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTCGGTGCACCACAGTTGTCTATGGAGGCTTCCAAACGAGATGCTTGCCTGAAAGCAATAGAAGAACTATATAAATTAGGTGCTTTAAGTAATTGTCTCTTGCCAAAGGAAGATGATGCAGAGCCAGAAGAACAGGTTTCTGGCTCTACTGATGAAGATGAATGTGAAGATGCAATCTCAAGAGGGGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGTCAGTCATGGACAAACAAGGATGAAATCGTCCATCTCAACTCGTACTACATAAAATTTTGTCCATGTCCAGTGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATAGAGGCTGAGAAATTGGAACTTGATCTACATCTTGCTCATGGTCGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAATATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAATTATTCTGGATAGATTAGAATTTGTTGCCGAGACTGTAGACTTGGGTATGGCTGCTGAAGCTCAGACAAGCTCATCGACCTTCTACCTTTTGCTTCCGGTCATATTGCAAGAATATGGAAATGCCATGAAAGTAGATTGGAAGACAGTGAAAAGATGCCTCTGGTCACCAATCTTCAGGCATCCACAATATACTATGGACAAAAGAAAAATCCCTTTTGATACTCACCTGCAGCTTGCCAATGGTTACAAAAGTATAAGAGATGTGGAGAATAGTTTAGTGTATGCACCACATAAAAGGACATTTTATTTTGTCACAAATATTGATTATGAAAAGACTGGATTTAGTCTTCATAAAGTATCAGGCACTTCAAGCTATGCCGATGACTTGATTGAAAAGTTTTCCATTCATCTCAAATACCCAGAACAACCGCTTCTGCGTGTGAAACCACTCCCCAATTTGCACAACCTGCTACACAACCGGAAGCGTGAAGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCCGAGCTATGTGAACTGAAAATAATAGGCTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCCTCAATTATGCATCGACTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAATTGCTATCTTTTTCTTTTCCCGAGGCAGCTGAAGTTAGTGCCTTTAGAGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTACTTGGTGATGCTTTCCTTAAATTTGTTGTTGCACGCCATTTTTTTCTCATGCATGACAGCTTTCATGAAGGAGACCTAACAAAAAGGCGTTCCAATGCTGTAAATAATTCCAATTTGTTGAAGTTGGCCATTGGGCGCAATTTGCAGATCTATATATGCGATCAGATATTTGATCCCTCTCAATTTTATGCATTAGGCCGTCCTTGCCCAAGAATTTGTTGTAAAGAAACGGAAGAAAGCATACACTTTTGTGCAAATTCTGTTAAGGAGCAAGGAAAAGTAACTGAAAACCGATGTAACAAAAATCATCATTGGCTACATAAGAAAACAGTTGCTGATGTGGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGCTTTAAAGCCGCAATTGCCTTTCTTACTTGGATTGGCATACAAGTTGGTTTTGAAGCTTCACAAGTGGTTGATATTTGCATAGCAAGTGCTGGCTATTTCCCTCTTTCTTCTGATGTAGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCAATTTTTACATAAGGGTCTGCTTCTCCAGGCATTTGTGCACCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCCTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCGGTTAACAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCTGTTTTGATAAATATCTTTTATGTGATTCAAATGGATTGTCTGAAGCGATAAAAAAGTATGTAGACTACGTTCGAAGTCCTTCAACAGATAGTGGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACGTAGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATACTGGGTTCAATTTGAACAAAGTTTGGAAAATTATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGCTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGTTTCTGCCAGTGCCATCAAAACTGACTAAAACGTTTACAGTTGAAGCGAAAGCAAGTGGGAATAATGTATGTGAAACAGCTTCAGCGACTGGCCAAAATAAAAAGGAGGCTTGTAGAATTGCTTCACTGATACTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACATTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACTGATACCAATACTGCCAAGCATATAATGGTAACTGCAGACTTGTACAGCAAATCAAACCCAGAAATTCGAAGAATCCCAGATACAGATGAAATATGCTCTCCATGCGTGAAACCTGTTGGTCAACTGCTTCAATCTTCTGTGAGGGAAAAGCTCAGTGGAATAACTGAAAATCATTGCAGTAGTGAATCATCAGGGGCAGGAACTTCAAGATCACGACTGTATGAATTGTGTGCTGCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAAGAAGAGGGACCAGATCACCTCAAACAATTCACTTACAAGATGACCTTGGAGATAGAAGAGATCCCTGATACAATCTTAGAGTTTGTTGGCGAACCTCAATCGAAAAAGAAAGATGCTGCAGAGAGTGCGGCTCAGGGTGCATTTTGGTACCTGCAACAGAAAGGCTACTTTGCCTAG 4905 0.4018 MSDGESSIVVGDQPSMDPSLSLSDQQLSLSLSQVELDDDDAVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPHKNICVFLAPTVALVHQQAKVIADSTDFKVGIFCGSSKRLKRRQDWEQEIGQHEVLVMTPQILLHNLSHCFIMMEMIALLIFDECHHAQVKSNHAYAEIMKIFYNSNSSKVPRIFGMTASPVVGKGASSEANLARSINSLEHMLDAKVYSVEDKELKSFVTTPVINIYHYASTASGETSMYLKIEEIKRQCIATLGRSSEDHQKRMNTKKLLNRMHDNVVFCLQNLGIWGALQASHILLSGDRSERHELVEAEGNSSDDSVCDTYLAQVAELFTSRCIKGDNVSDDLSSSEILKEPFFSAKLLRLFGILSTFRLQKNMKCIIFVNRIVTVRSLSYILQKLKLLRQWRSDYLVGVHSGLKSMSRKTMNVILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEVTFRTSDETFIIPEEKIFRVESTGASVSSGYSISLLHQYCSKLPHDEYFDPKPNFYFLDDSEGIVCHIRLPSNAPIHQIFGAPQLSMEASKRDACLKAIEELYKLGALSNCLLPKEDDAEPEEQVSGSTDEDECEDAISRGELHEMLVPSAFGQSWTNKDEIVHLNSYYIKFCPCPVDRVYKEFGLFIMARLPIEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEINMAEKFQEMFLKIILDRLEFVAETVDLGMAAEAQTSSSTFYLLLPVILQEYGNAMKVDWKTVKRCLWSPIFRHPQYTMDKRKIPFDTHLQLANGYKSIRDVENSLVYAPHKRTFYFVTNIDYEKTGFSLHKVSGTSSYADDLIEKFSIHLKYPEQPLLRVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKQLLSFSFPEAAEVSAFRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSFHEGDLTKRRSNAVNNSNLLKLAIGRNLQIYICDQIFDPSQFYALGRPCPRICCKETEESIHFCANSVKEQGKVTENRCNKNHHWLHKKTVADVVEALVGAFLVDSGFKAAIAFLTWIGIQVGFEASQVVDICIASAGYFPLSSDVDIPSLESKLGHQFLHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRCFDKYLLCDSNGLSEAIKKYVDYVRSPSTDSGIKEGPKCPKALGDVVESCVGAILLDTGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELEFLPVPSKLTKTFTVEAKASGNNVCETASATGQNKKEACRIASLILFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNTAKHIMVTADLYSKSNPEIRRIPDTDEICSPCVKPVGQLLQSSVREKLSGITENHCSSESSGAGTSRSRLYELCAAYCWKPPSFECCKEEGPDHLKQFTYKMTLEIEEIPDTILEFVGEPQSKKKDAAESAAQGAFWYLQQKGYFA 1634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01150 1634 SMART PAZ_2_a_3 852 1000 IPR003100 GO:0005515
Vimu7g01150 1634 FunFam Endoribonuclease dicer-like protein 45 284 - -
Vimu7g01150 1634 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 579 669 IPR005034 GO:0016891
Vimu7g01150 1634 ProSiteProfiles PAZ domain profile. 874 974 IPR003100 GO:0005515
Vimu7g01150 1634 SMART riboneu5 1023 1190 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 SMART riboneu5 1226 1378 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 Pfam Dicer dimerisation domain 579 663 - -
Vimu7g01150 1634 SMART helicmild6 425 515 IPR001650 -
Vimu7g01150 1634 SUPERFAMILY RNase III domain-like 1023 1184 IPR036389 GO:0004525|GO:0006396
Vimu7g01150 1634 ProSiteProfiles Ribonuclease III family domain profile. 1211 1355 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 FunFam Endoribonuclease dicer-like 1 574 670 - -
Vimu7g01150 1634 Pfam Ribonuclease III domain 1246 1355 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 Pfam Ribonuclease III domain 1039 1170 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 Gene3D - 1560 1629 - -
Vimu7g01150 1634 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1553 1629 IPR014720 -
Vimu7g01150 1634 Gene3D - 388 549 IPR027417 -
Vimu7g01150 1634 CDD DEXHc_dicer 48 247 - -
Vimu7g01150 1634 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1554 1628 - -
Vimu7g01150 1634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 395 558 IPR001650 -
Vimu7g01150 1634 ProSitePatterns Ribonuclease III family signature. 1246 1254 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 FunFam Endoribonuclease dicer-like 1 386 549 - -
Vimu7g01150 1634 Gene3D Dicer dimerisation domain 575 671 IPR038248 -
Vimu7g01150 1634 CDD DSRM_EIF2AK2-like 1381 1448 - -
Vimu7g01150 1634 SUPERFAMILY RNase III domain-like 1210 1374 IPR036389 GO:0004525|GO:0006396
Vimu7g01150 1634 Pfam PAZ domain 874 995 IPR003100 GO:0005515
Vimu7g01150 1634 Gene3D paz domain 867 972 - -
Vimu7g01150 1634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Vimu7g01150 1634 CDD DSRM_DCL_plant 1560 1629 - -
Vimu7g01150 1634 FunFam Endoribonuclease dicer-like 1 1205 1376 - -
Vimu7g01150 1634 Gene3D - 1380 1459 - -
Vimu7g01150 1634 Pfam Helicase conserved C-terminal domain 407 513 IPR001650 -
Vimu7g01150 1634 Gene3D - 48 285 IPR027417 -
Vimu7g01150 1634 SUPERFAMILY dsRNA-binding domain-like 1556 1631 - -
Vimu7g01150 1634 Gene3D Ribonuclease III domain 1014 1181 IPR036389 GO:0004525|GO:0006396
Vimu7g01150 1634 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1382 1450 IPR014720 -
Vimu7g01150 1634 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g01150 1634 Pfam Type III restriction enzyme, res subunit 57 215 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vimu7g01150 1634 SMART ultradead3 46 251 IPR014001 -
Vimu7g01150 1634 CDD RIBOc 1024 1180 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 SMART DRBM_3 1554 1628 IPR014720 -
Vimu7g01150 1634 SMART DRBM_3 1383 1449 IPR014720 -
Vimu7g01150 1634 ProSiteProfiles Ribonuclease III family domain profile. 988 1170 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 CDD RIBOc 1227 1377 IPR000999 GO:0004525|GO:0006396
Vimu7g01150 1634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 529 IPR027417 -
Vimu7g01150 1634 PANTHER DICER-RELATED 63 1453 - -
Vimu7g01150 1634 SUPERFAMILY PAZ domain 871 972 IPR036085 GO:0005515
Vimu7g01150 1634 Gene3D Ribonuclease III domain 1209 1379 IPR036389 GO:0004525|GO:0006396
Vimu7g01150 1634 SUPERFAMILY dsRNA-binding domain-like 1337 1448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01150 Vimu-Chr7 11172911 11191854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01150 413 512 Eukaryotic Initiation Factors Gene Family AT1G72730 31.000 2.37e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01150 K11592 - gmx:100818702 2826.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01150 7 11172911 11191854 Vimu7g01150 7 11172911 11191854 ECH