Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01142 ATGGCTTTCCAAGACCATCTCCACCACGAAATAGCGTTCCAGCGTTTCACCGAGGAGCAAGAGCTGAGCGAGGGAAGAGATATGCAGCAGAGGCTCCCACCGACATGGCTCAACAGCGTCAACGCGGCGCAGCAGCGCCAGCAGAATTTTCTCGACGCCGCCGCCGAGAAAAGCGTGGATCGGAACCGGGGCGAGAGCAATTGCGAGTCGGAGGATTTGAGGGAATACAAAGCGGACATTCTTGGGCATCCTCTCTACGATCAACTGTTATCGGCTCACGTGTCGTGCCTCAGGATTGCCACGCCCGTCGACCAGCTTCCCAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTGGTGGAAAAGTACTCGGCACTCGCGAATAACGGCGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTCCTGTTGCTCTGTGCATTTAAAGAACAACTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTGTCTCCCGGAGAAGGTACGGGTGCAACAATGTCAGACGATGAAGATGATCAGGCAGAGAGCAACGGCAACCTATACGAAGGGAGCTTCGACGGCGGCGAAAGCCTTGGGTTTGGTCCTCTTGTCCCGACTGAGACTGAAAGATCCTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAATTGAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGACGAGCAGGGAAGCTTCCAGGAGACACCACATCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCATACCCCACTGAGGAAGACAAAGCTAGACTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAATAACCCTTCATCCTCTAGTAACACCAAAACCAAGCGCAAGAGGTAG 1014 0.5168 MAFQDHLHHEIAFQRFTEEQELSEGRDMQQRLPPTWLNSVNAAQQRQQNFLDAAAEKSVDRNRGESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALANNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNGNLYEGSFDGGESLGFGPLVPTETERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNTKTKRKR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01142 337 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 328 - -
Vimu7g01142 337 ProSiteProfiles ELK domain profile. 239 259 IPR005539 GO:0003677
Vimu7g01142 337 CDD homeodomain 262 323 IPR001356 GO:0003677
Vimu7g01142 337 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Vimu7g01142 337 MobiDBLite consensus disorder prediction 316 330 - -
Vimu7g01142 337 Pfam KNOX1 domain 76 117 IPR005540 GO:0003677|GO:0005634
Vimu7g01142 337 MobiDBLite consensus disorder prediction 316 337 - -
Vimu7g01142 337 ProSiteProfiles 'Homeobox' domain profile. 259 322 IPR001356 GO:0003677
Vimu7g01142 337 SMART HOX_1 261 326 IPR001356 GO:0003677
Vimu7g01142 337 Pfam KNOX2 domain 132 181 IPR005541 GO:0003677|GO:0005634
Vimu7g01142 337 SMART KNOX2_2 127 182 IPR005541 GO:0003677|GO:0005634
Vimu7g01142 337 Pfam Homeobox KN domain 279 318 IPR008422 GO:0003677|GO:0006355
Vimu7g01142 337 MobiDBLite consensus disorder prediction 181 205 - -
Vimu7g01142 337 Pfam ELK domain 239 260 IPR005539 GO:0003677
Vimu7g01142 337 SUPERFAMILY Homeodomain-like 261 325 IPR009057 -
Vimu7g01142 337 Gene3D - 260 321 - -
Vimu7g01142 337 SMART ELK_2 239 260 IPR005539 GO:0003677
Vimu7g01142 337 FunFam homeobox protein knotted-1-like 3 isoform X1 260 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01142 Vimu-Chr7 11086758 11091080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01142 76 337 Homeobox Transcription Factor Family AT5G25220 83.774 7.98e-162 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu7g01142 KNOX2 3.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01142 - - gmx:100803673 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01142 7 11086758 11091080 Vimu7g01142 7 11086758 11091080 ECH
Vimu7g01142 7 11086758 11091080 Vimu10g00715 10 6208924 6213981 PCT