Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01139 ATGGCGTTTGATCAGAATTCGGTTCCATTGGATCTTCGTCCGTTGAATGTGGCCGCCGCGATAGCGGAGGAGCCGATGATTTCGCCGGCCGCACTCACGCCGCCGACTCCTAATTCTGTCGGCGAGCTTTTTTACCAGCCGGCGGCCTCCGCCGGCACAACGTGGTGCGTCCGCCCCATTGCGCATGCCAACGTGAGCCCTGCCGCGGCGTATGGGTTTAGCTACGGCGCTTCCAGCTTTGGCAGTCGCGTCGTGGCCGGGAATGCTTTGAGTTTGGGGAAGCTTGTGGGGTGTAATGGATTGGACAAGGCCTGCAATGATGCGAGTGGTTTTAGTTATGGTGTTGGCGGGGTCCGGGGCGGCAGAGTGGTCGGTAGTGGAAGCGATCACGGTGGCGGGGATGAGGGTGGCGGCGGCGGTGATGATTCGGTCTCCGGGAAGAAGGTGAAGTTTCTCTGCAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGGGGGCAAACAAGGATCATCAGTGTTAGGAAGGATGTGAGTTTCAATGATTTGGTGCAGAAGATGGTTGACACTTATGGGCAGGCTGTGGTTATTAAGTATCAGCTTCCTGAAGAGGATCTTGATGCCTTGGTGTCCGTGTCATGTCACGATGATATTGAGAATATGATGGAAGAGTATGATAAGTTGGTTGAGAGATCTTCTGACGGTTCTGCAAAACTAAGAGTTTTTCTGTTTTCTGTTTCGGAGACGGAAGTTTCTAGTGGGATGCAGTTGGGGGACTTGCAGGATACCGGGCAGAAATATTTTGATGCTGTGAATGGGATTGGTACGACAGATGCGATTGGGTCGGGTGGTGGGATCAATAGGAAGGAGAGTGTTACAAGTGCTGCTTCAACCCAGAATTCGGATTTGAGCGGGGCTGATACTTTTGATAGTTCAATTACTGGTCAAGGGGATGTCACTGGGGTGCCCTTGTCATCACCTAAAGATTATGTGACAGCAGCTTCCTCCGACTCAAGTGCTAATATAGTGAGTTCACAGGCCAGTGCACCGGCTTCGATACCAATGCCTGTGGCTAAGGCTAGTCCAACCCCATCCCACAACCCTTATTTTCAGAATGAGGTTGAGTTAGAAAGGTCTGTCCCTGTTGCTTTGCCCCAGCAGCCTTTTGGATTGCAGCAAGCTGGAATAGAAGTTCCATCCCCTGCACCTTATTATCAGACTTGTGTTGATCCTAGCCAGGAGGTTATGAACCATGCGGACTATGTGCAAGTTACTTCACAGATGAGGTTCACAAACCCTCAGCTTGTAGGAAAGACCGGGACTGTCTTGAGGCAACAGCAGTTTCATGATAATACTCCCGGCTTAGCATTGCATCATCAGGTAATCACCGGGGTACAAATGACTGTGGCTCCACAATCTTCTCACGCTAGTGTGAGACCGAATGTTATTCAACCACAAACGTTGGTGCAATCACAGCAACATCTTTTGGATCAATACCATGATGAAAATACATCAGGGGTAAGGATTATCCAGCTTCCTGCTGAACCTAGCTACAACGCCTACCAGGTTCCAGCGAGTCAAGTATCACCTGTCATAGTTGGAGGCAATTATAGCTGGGTTCAGGTTCCTTCACAAGAGCGCGTTGTCATCTCGGATGGAGTATCACCCCAACAACAGGTAACGAGTCATGAGAAATTCCGAAGAATCGAGGACTGTTCTATGTGTCAGACAAAACTACCGCATGCACATTCTGATCCAGTAGTTCCGGATGAGCGTGGTAGTGGTGCAGGTCCTGTTCCTGATTCAACCCCAAGTCACTATAGCTTCCCAATGGAGGACAACATAAAAGCTCAAGCATCAAATATGATTTTGCCAGTGGCGATGGCGCCGTTGAAGGAAGGCATTGCTGAACACGGGGCTGGGATCAGACCCAGGGTCGTTGGCAAACTGGAACCTCCTGATGGAGTGCATCACACTGAGACCACCGGGCTTTCTCATAATATTGAGCCACAGCCGGAAGAATTTAATCATGCCGGGAATTCATTTTTCCAGGAAAAAATTGAATTGAAAGGTAGAAAACAATCTCCAAATGATGAGCACATGGGAACAGCAGTACTGTCTTATTTAGATGATGTTGGCCACCAACACATGGTACCAGTTGAAAACTGGGTTAAACAGGATGTGCTTATTAACAAACCTATGAATAATGATATGTCTATGGTCGATGGAACATCTATGCGAACTTCAGAGTGCATGGTTCAAGGATCTCCAAATGAATATACTAACGAACGTACTGGGGTTGTTTCTAAATCAGATGATATACATAATTGGATTAGACAAGACCATCTAAAACCAATTGATGGAAGGATGGACACCTTCAAGATACAGAATTCTGATGCTTTTGTAAGTAATGACTACTCTTTTCTGCCAGCTGATAAACCCAGTGGGAATGATAATTTAGGTTACAGCACTCATAAATCTGTAGAGGGAGAGGTGATTCTGGATAACTTTGGCAGGTCAAAGTTGATAGTTGATGCAAATCAAAATAATATTGCAGCTGTGCTGCCTTGTTCTTCTTCATACAGGCAAAATTCCAGGTCAGGGGAACACAATGAGGCTACACAACCCCCTATTTGGGGCATTCCCGGCTCAAATCCTCAACCGAATATTGGAAACCCCCACACCGAAGACGCTGCACTATCTTCATCATCTCCATCTGTCAGGTTTGGAGATGTGCAGGATACTCCGAACTCACTGTTCAGTAATCAGGATCCATGGAATATACAGCATGGTACCTTCTTTCCACCTGCTAGACAAAGCAAAGCTGCATTGAAGAAAGAAACCTTTTCTTGCCAGGATCCCTTTGCCGAGGATACTGGTAGCTTTGGGGAACAAAGTTTAGAAGCACGGTTGGATGATAGCCTCTATCAGTCGTTCAAACAAAATTTAACTTTAGAACATAGTCGGTCAGCCAAAGGTTCAGCAGAAGACCAACAACTCCAAGCTGTTGCGGAGAATGTAGCTGCCTCTGTTTTGCACTCAAGAAATCCTTCAAATTCTGACTTGCATTCCACAGATGTTTCCTGCTGTGATAACATTGAGGATGACAGTGTTCAAAATAATTTTATGGATGAAAAGTGTGGACATACAACTCAGGAGGTCTGGAGCAGGCAACTAGAAAAAACAAATTGTGGCATTCTAGCATCAGGTTTTGGAAAATTACAGGTGATAAAGAACTGTGATCTTGAAGAACAGACAGAACTTGGTTCTGGTACGTTTGGGACCGTATATCATGGAAAATGGAGGGGCACTGATGTTGCAATCAAGCGCATTACTGATAGATGTTTTGCTGGAAAGCCTTCGGAGCAAGAGCGCATGAGAAATGACTTCTGGAATGAGGCAATCAAGCTAGCTGACTTGCACCATCCAAATGTCGTAGCTTTCTATGGTGTTGTGCTTGATGGCCCTGGGGGTTCTGTGGCAACAGTTACTGAATATATGGTTAATGGTTCCTTAAGAAATGCCTTGCAGAAGAGTGACAGGAATCTTGAAAAGCGCAAGCGACTTTTGATTGCAATGGACGTGGCCTTTGGCATGGAGTACCTACATGGAAAAAACATAGTACACTTTGACTTGAAAAGTGACAACTTGCTTGTTAATCTCCGAGATCCACACCGACCAATATGCAAGATTTGCACTCCAGTATTTGGGATGGGTATCATGAACACAAAACAGAGAATAATGGGTATTCCTTTGAAGACGGGTCATCAACTTGCAGATGCTGATGCCCCTCACTTAAAACTAAGGATATAA 3831 0.4625 MAFDQNSVPLDLRPLNVAAAIAEEPMISPAALTPPTPNSVGELFYQPAASAGTTWCVRPIAHANVSPAAAYGFSYGASSFGSRVVAGNALSLGKLVGCNGLDKACNDASGFSYGVGGVRGGRVVGSGSDHGGGDEGGGGGDDSVSGKKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRKDVSFNDLVQKMVDTYGQAVVIKYQLPEEDLDALVSVSCHDDIENMMEEYDKLVERSSDGSAKLRVFLFSVSETEVSSGMQLGDLQDTGQKYFDAVNGIGTTDAIGSGGGINRKESVTSAASTQNSDLSGADTFDSSITGQGDVTGVPLSSPKDYVTAASSDSSANIVSSQASAPASIPMPVAKASPTPSHNPYFQNEVELERSVPVALPQQPFGLQQAGIEVPSPAPYYQTCVDPSQEVMNHADYVQVTSQMRFTNPQLVGKTGTVLRQQQFHDNTPGLALHHQVITGVQMTVAPQSSHASVRPNVIQPQTLVQSQQHLLDQYHDENTSGVRIIQLPAEPSYNAYQVPASQVSPVIVGGNYSWVQVPSQERVVISDGVSPQQQVTSHEKFRRIEDCSMCQTKLPHAHSDPVVPDERGSGAGPVPDSTPSHYSFPMEDNIKAQASNMILPVAMAPLKEGIAEHGAGIRPRVVGKLEPPDGVHHTETTGLSHNIEPQPEEFNHAGNSFFQEKIELKGRKQSPNDEHMGTAVLSYLDDVGHQHMVPVENWVKQDVLINKPMNNDMSMVDGTSMRTSECMVQGSPNEYTNERTGVVSKSDDIHNWIRQDHLKPIDGRMDTFKIQNSDAFVSNDYSFLPADKPSGNDNLGYSTHKSVEGEVILDNFGRSKLIVDANQNNIAAVLPCSSSYRQNSRSGEHNEATQPPIWGIPGSNPQPNIGNPHTEDAALSSSSPSVRFGDVQDTPNSLFSNQDPWNIQHGTFFPPARQSKAALKKETFSCQDPFAEDTGSFGEQSLEARLDDSLYQSFKQNLTLEHSRSAKGSAEDQQLQAVAENVAASVLHSRNPSNSDLHSTDVSCCDNIEDDSVQNNFMDEKCGHTTQEVWSRQLEKTNCGILASGFGKLQVIKNCDLEEQTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRNDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKSDRNLEKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKICTPVFGMGIMNTKQRIMGIPLKTGHQLADADAPHLKLRI 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01139 1276 MobiDBLite consensus disorder prediction 286 330 - -
Vimu7g01139 1276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1213 1225 IPR008271 GO:0004672|GO:0006468
Vimu7g01139 1276 MobiDBLite consensus disorder prediction 293 327 - -
Vimu7g01139 1276 PANTHER OS05G0427100 PROTEIN-RELATED 143 472 - -
Vimu7g01139 1276 Pfam Protein tyrosine and serine/threonine kinase 1089 1239 IPR001245 GO:0004672|GO:0006468
Vimu7g01139 1276 MobiDBLite consensus disorder prediction 124 143 - -
Vimu7g01139 1276 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1081 1175 - -
Vimu7g01139 1276 MobiDBLite consensus disorder prediction 587 609 - -
Vimu7g01139 1276 SUPERFAMILY Protein kinase-like (PK-like) 1083 1237 IPR011009 -
Vimu7g01139 1276 Pfam PB1 domain 168 251 IPR000270 GO:0005515
Vimu7g01139 1276 Gene3D Transferase(Phosphotransferase) domain 1 1170 1250 - -
Vimu7g01139 1276 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 168 252 - -
Vimu7g01139 1276 ProSitePatterns Protein kinases ATP-binding region signature. 1094 1125 IPR017441 GO:0005524
Vimu7g01139 1276 MobiDBLite consensus disorder prediction 867 914 - -
Vimu7g01139 1276 SMART serkin_6 1088 1265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01139 1276 Gene3D - 169 252 - -
Vimu7g01139 1276 SUPERFAMILY CAD & PB1 domains 164 255 - -
Vimu7g01139 1276 SMART PB1_new 163 252 IPR000270 GO:0005515
Vimu7g01139 1276 CDD PB1_UP2 152 250 - -
Vimu7g01139 1276 ProSiteProfiles Protein kinase domain profile. 1088 1276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01139 1276 MobiDBLite consensus disorder prediction 891 914 - -
Vimu7g01139 1276 Gene3D Phosphorylase Kinase; domain 1 1082 1169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01139 Vimu-Chr7 11077143 11082416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01139 147 627 MAP Kinase Kinase Kinase AT3G46920 41.068 4.32e-88 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu7g01139 PK_Tyr_Ser-Thr 7.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01139 - - gmx:100819234 1698.72