Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01134 ATGGGTTCCTCCTCTAGTAGACCTGCCACTCGCCCTTCTGCTTCTTCTACTCACAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCATCAGATGGAAGAACATTCATCTGAACTTCAGGTTCATTTAGCAAGAAATTTCGATGGTGAAATTCATAAAGTCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACTTCATCTGATATGAGAACCGAATTCCATGGGAATACTAGTGCTGGAAGTTCTTATCGAAACGTTGCAACACAGAGTCAGAGGAACTGCTTGTCTGAACACGAGGAGCAGGCCCCTCCTTGTCAGCTAAGTGCTGGTCATAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATAATCCAGTGGTTAGAGGTGGTGTCTCTCAAGTCTCTCACGAGACAGTGCATCAAAGAAGTTCATCCCCTCAGGAGCATGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATCCAAAATTCTTCCAACTTTGTTTCTCAAGGTTCCAACTCAGCAGCAACTTCTCAAGGACCAGAAGAAGAACCATGTCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGAACAGGAAATGATAGTGTGCTTCAAGTTGACGTAGTCACAATATCTTCCAACATTTTGTCTGGAAGCAATGCTGATGCCAATGATCATGACGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTACCGGAGGTGCCGATGATCCTGGATCTCAAGATCGATGGCTAGTTGATTTCGGTGGTGATTTGTCAAATGATGGAGTTGGAGGTGCTTCTGCATATATGGGCAGCAGAATTCACAGATTGAATGAACGAAGAATGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGCGGTTTTGACGAGATTGGGCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCTCCAATGGCTGAGGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCGGGATCACTGTCTCTATCTATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCTTGAAATCTCACAAAAAGGTTGAAATGGCTGATGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGTCTCCATGAGTATCACATGTCATGTGTGGATAAGTGGCTTAAAGAAATACACGGTGTATGTCCTCTGTGCCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAATCTCACTGA 1623 0.4449 MGSSSSRPATRPSASSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSSELQVHLARNFDGEIHKVTEESSLSCTEARISCSPPAETSTSSDMRTEFHGNTSAGSSYRNVATQSQRNCLSEHEEQAPPCQLSAGHSGRESYSDSSNTASTSFVAQQSSDPVSVNVSANKDVVNDVNNPVVRGGVSQVSHETVHQRSSSPQEHVNFSSGEISVENHTSAFISIQNSSNFVSQGSNSAATSQGPEEEPCRETIPSGLGILVSNRERGTGNDSVLQVDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGGDLSNDGVGGASAYMGSRIHRLNERRMRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEMADGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSEVQSH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01134 540 MobiDBLite consensus disorder prediction 74 118 - -
Vimu7g01134 540 MobiDBLite consensus disorder prediction 132 158 - -
Vimu7g01134 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 525 IPR013083 -
Vimu7g01134 540 FunFam Putative RING zinc finger domain superfamily protein 446 526 - -
Vimu7g01134 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Vimu7g01134 540 SMART ring_2 479 520 IPR001841 -
Vimu7g01134 540 SUPERFAMILY RING/U-box 469 524 - -
Vimu7g01134 540 ProSiteProfiles Zinc finger RING-type profile. 479 521 IPR001841 -
Vimu7g01134 540 Pfam Ring finger domain 478 521 IPR001841 -
Vimu7g01134 540 MobiDBLite consensus disorder prediction 74 158 - -
Vimu7g01134 540 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01134 Vimu-Chr7 11055732 11058657 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01134 390 525 C3H Transcription Factor Family AT5G45290 52.980 8.59e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01134 - - gmx:100783722 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01134 7 11055732 11058657 Vimu7g01134 7 11055732 11058657 ECH