Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01132 ATGTGTGTGCAAGAGGGTGAACAAGTTGGTGAGGATATAGAGAAGAACGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATGCCCAGATGGACAACAGGGAAAAAGACTCTTCCTTTAGAACCCCCACTGACCAGATCAGTGTTGCAAATTCATTTCCTCTGGAAAGCATATGTGAGGATACAGAAACTGTGGACAAAAAGCAGAACCTGATGAACTTTGTTCCTACTCTTCGGTCTGGTGAATGGAGTGATATTGGAGAACGCCCTTCCATGGAAGATACACACATATGCATTGGAGATTTGGCCAAAAAATTTGGCAATAACTTACTTTCTGAAGAAGCTATTTCCTTTTATGGTGTATTTGATGGACACGGAGGGAAGAGTGCTGCACACTTTGTTCGTGATCATCTACCACAGGTGATTGTTGAGGATGCTGACTTTCCTTTGGAACTTGAGAAGGTTGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAGATCATGTTCTATTGAGTCTTCCCTATCTTCTGGCACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCCGGAGACTGTCGTGCTGTGTTATCCCGTGGTGGCCGAGCTGTAGAAATGTCCAAAGATCACAGACCATTGTGCATGAAAGAAAGGATGAGGATTGAGTCTGTAGGTGGATACATAGATGATGGTTACCTGAATGGCCAGTTAGGTGTGACTCGTGCTCTAGGGGACTGGCATCTTGAAGGAATGAAGGAGATGAATGGAAAACATGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAGTTTTTGATAATTGGGAGTGATGGAATATGGGATGTTTTTCGCAGCCAGAATGCAGTGGACTTTGCTCGAAGGAGGCTTCAAGAACACAATGATGTGAAGCAGTGTTGCAAGGAGATAATAGGAGAAGCAATAAAGAGAGAAGCAACAGACAATTTGACAGTGGTGATGGTGTGTTTTCACTCAGAACCACCACCTCCTGTGGTAGTAGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAAAATCTCAAATGCTTGCTAGAAGGATAA 1146 0.4346 MCVQEGEQVGEDIEKNVDNRRVSWPLHCDLLHAQMDNREKDSSFRTPTDQISVANSFPLESICEDTETVDKKQNLMNFVPTLRSGEWSDIGERPSMEDTHICIGDLAKKFGNNLLSEEAISFYGVFDGHGGKSAAHFVRDHLPQVIVEDADFPLELEKVVTRSFLETDAEFARSCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRGGRAVEMSKDHRPLCMKERMRIESVGGYIDDGYLNGQLGVTRALGDWHLEGMKEMNGKHGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKREATDNLTVVMVCFHSEPPPPVVVERPRVRRSISAEGLQNLKCLLEG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01132 381 PANTHER PROTEIN PHOSPHATASE 2C 70 346 IPR015655 GO:0004722|GO:0006470
Vimu7g01132 381 FunFam Probable protein phosphatase 2C 22 66 351 - -
Vimu7g01132 381 Pfam Protein phosphatase 2C 93 340 IPR001932 -
Vimu7g01132 381 CDD PP2Cc 83 348 IPR001932 -
Vimu7g01132 381 SUPERFAMILY PP2C-like 74 350 IPR036457 -
Vimu7g01132 381 SMART PP2C_4 73 346 IPR001932 -
Vimu7g01132 381 Gene3D - 63 352 IPR036457 -
Vimu7g01132 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Vimu7g01132 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01132 Vimu-Chr7 11041847 11044670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01132 45 381 PP2C-type Phosphatase Gene Family AT2G25620 57.771 1.44e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vimu7g01132 PP2C 8.6e-67 CL0238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01132 7 11041847 11044670 Vimu7g01132 7 11041847 11044670 ECH
Vimu7g01132 7 11041847 11044670 Vimu10g00709 10 6143431 6146461 PCT