Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01108 ATGAGAAAGAAAACAAAGCAAGTAGGAGAAATAAGGGAGGATAGTAAAATGGGAGATAGCAGTCCCAAAGCATATGATAATGATACTATGGTGTTCATTTCCATGTCTCAAGAATTGAAGAATGAGGGAAACAAGCTGTTCCAGAAGAGGGATGTTGAAGGAGCAATACTAAAATATGAGAAAGCCCTGAAGTTACTTCCGAGAAATCATATTGACGTGTCCTATCTGCGGAGCAACATGGCTGCATGCTATATGCAGATGGGGGTCAGTGAGTTCCCAAAGGCTATTCATGAATGTGATTTGGCTCTTGAAATGACACCCAAATATAGTAAAGCACTGTTGAAGAGAGCAAGGTGCTACGAAGCTTTAAATAGGCTGGATTTAGCTCTAAGAGATGTCAGCACTGTTCTAAAGATGGAACCAAATAATGTCATGGCATTAGAGATCTCAGAAAAGGTGAAAAATGCACTTGAAAAGAAAGGATCGAGAGTTAACGATACAATAATTGAGTTGCCTCCAAATTACGTCGAACCTCCTAGTGCTTTGACTCCAGAAAAGATAGTGAAAGAGAATATGCGCAAGAATAAGGGCTATAAGGAGGAAAAGAAGGCTCCTAATGACAAACTTCTAGAAAGGAAAACTGAGGAGAAGAAGACTGAGGGAAGCATTGTGGTTGTTGAGAAGAAGACCAACACATCCAAGAAGAAGAAGGCCAAGGAAAAGAATGATGAGAAGAAGGCTGATATAAAGGAGGTTATAGAGGAAGGAAGTAATGGTAGAAAGGAACATGTTCCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGTGCTGAACTGCCTATCAATTGTAGCCTCTTCCAGTTAAGAGAAGTTATTCAAGATCGATTCTCGAGCCTAGGAGCTGCTCTTGTAAAATACAGGGACCAAGAAGGTGATTTAGTCACAATCACTTCTGATGATGAATTAAGAAGGGCTGAAATAGGATCTCATAGTTGTATCAGACTGTACATCGTAGAAGCCACTCCTGAGCAGGATCTGCTTTTTGAGAAATTTAAAGTGAAGGAGGGGGAAGTTGTTGGCATTAACATTGCAGTTGAGAATGGCTGTGTGGGAAAAGCAAATGGAATTGCTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCAAAATTGTTCAAGAACCATGTTGGTTTTGAGTGTGACAGATATTTGGATTTTCACGAACATGGTATGAAGCTATATTCCGAGGCTATGGAGGAGACGGTTACAGGCGAAGAAGCACAAGGCCTATTCGACATGGCTAGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTTCATATGTCTAAGGCAAGGAAAAATATATATAAAACAGAAGACTCTTCTAAAGAGCATCTATGCGAACTGATCAAGAGTTCATATGAATGGGCGCTGGAAGAGTATTCAAAGGCAGAAGAAAAATATGATGCAGCCATTAAAATTAAGTCAGATTTTTATGAAGGATTTTTGGCTCTGGGGCTGCAGAAGTTTGAGCAAGCAAAACTTGTGTGGTATTCTGCACTCAATAGTAATGTAGAGTCATTAACATGGCCTTCCGCTGAGGTTCTCCATCTTTACAACAACGCTGAAGAAAATATGGAAAAAGGAATGCAGATATGGGAAGAATCTGAAAAGCAGAACTTGAGTAAAATGTCTGATTCAAATTATTCAATATTGGATTTGCAGAACATGGGGTTGGATGGGGTTCTTAAAAGTATGTCCTCAGAAGAACTTGCAGCACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTATCATTCTCTACGAACGCTCAATTGTGGAGTTCAAATCAGGGCTACCTATGTGGCATGAAACTCTTGCGGCTTCAGTTGAGAAATTTGAACTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAATCACTGTTCAAATAATACTGCAGTAGATGGTCTTGCCTACAAAATTGATGAAATAGTACAGGCATGGAAGGAGATGTACAAAGCTAAAATGTGGAAGAGTGGATTTCCATCATTTCGTTTGGAAGCCTTATTCAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2163 0.3957 MRKKTKQVGEIREDSKMGDSSPKAYDNDTMVFISMSQELKNEGNKLFQKRDVEGAILKYEKALKLLPRNHIDVSYLRSNMAACYMQMGVSEFPKAIHECDLALEMTPKYSKALLKRARCYEALNRLDLALRDVSTVLKMEPNNVMALEISEKVKNALEKKGSRVNDTIIELPPNYVEPPSALTPEKIVKENMRKNKGYKEEKKAPNDKLLERKTEEKKTEGSIVVVEKKTNTSKKKKAKEKNDEKKADIKEVIEEGSNGRKEHVPNKTVKLIFGDDIRCAELPINCSLFQLREVIQDRFSSLGAALVKYRDQEGDLVTITSDDELRRAEIGSHSCIRLYIVEATPEQDLLFEKFKVKEGEVVGINIAVENGCVGKANGIASSSCIEDWIIQFAKLFKNHVGFECDRYLDFHEHGMKLYSEAMEETVTGEEAQGLFDMARDKFQEMTALALFNWGNVHMSKARKNIYKTEDSSKEHLCELIKSSYEWALEEYSKAEEKYDAAIKIKSDFYEGFLALGLQKFEQAKLVWYSALNSNVESLTWPSAEVLHLYNNAEENMEKGMQIWEESEKQNLSKMSDSNYSILDLQNMGLDGVLKSMSSEELAAQEAHMRSQINLLWGIILYERSIVEFKSGLPMWHETLAASVEKFELAGASPTDIAVILKNHCSNNTAVDGLAYKIDEIVQAWKEMYKAKMWKSGFPSFRLEALFRRRVSKTYHAFELA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01108 720 PANTHER PROTEIN CLMP1 10 718 IPR044517 -
Vimu7g01108 720 CDD PB1 268 340 - -
Vimu7g01108 720 SMART tpr_5 110 143 IPR019734 GO:0005515
Vimu7g01108 720 SMART tpr_5 475 508 IPR019734 GO:0005515
Vimu7g01108 720 SMART tpr_5 74 109 IPR019734 GO:0005515
Vimu7g01108 720 SMART tpr_5 36 69 IPR019734 GO:0005515
Vimu7g01108 720 MobiDBLite consensus disorder prediction 1 22 - -
Vimu7g01108 720 Gene3D - 266 346 - -
Vimu7g01108 720 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Vimu7g01108 720 SUPERFAMILY TPR-like 36 150 IPR011990 GO:0005515
Vimu7g01108 720 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Vimu7g01108 720 Coils Coil 235 255 - -
Vimu7g01108 720 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g01108 720 MobiDBLite consensus disorder prediction 190 215 - -
Vimu7g01108 720 Gene3D Tetratricopeptide repeat domain 34 164 IPR011990 GO:0005515
Vimu7g01108 720 Pfam PB1 domain 268 341 IPR000270 GO:0005515
Vimu7g01108 720 SUPERFAMILY CAD & PB1 domains 266 329 - -
Vimu7g01108 720 ProSiteProfiles PB1 domain profile. 266 343 IPR000270 GO:0005515
Vimu7g01108 720 SMART PB1_new 266 343 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01108 Vimu-Chr7 10881911 10884177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01108 19 143 Calmodulin-binding Proteins AT3G25230 30.216 2.25e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01108 K26538 - gmx:100807387 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01108 7 10881911 10884177 Vimu7g01108 7 10881911 10884177 ECH
Vimu7g01108 7 10881911 10884177 Vimu10g00675 10 5777009 5779265 PCT