Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01080 ATGTCAATAAACCACCTCAGGAATGGAGACTCGGAACCTCTCCTACGTCAAACTCTACTGTCTTCTTCACAGAGATCCATTGTCAACTCCACATCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCAATCGAGAGCCTCGATTACGAGATTTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGAAAGCCTTGTCGGTTTCTGCAACAATCTCGCGGTGGAGAATCTCGCTGGTATCAAGTTTGTGGTTACCTCCAATATGATGTTGGAGAGGAGCTTGGAATTTCTCGCAGGTTCCAGTTGGCCTTCTTCATATTTTTTGTTTCTAATTTGGGTCTCACGCTTTTTGCCTCCTTAATTACGGCTTTTATAGCACCTGCGGCCACAGGTTCAGGTATACCTGAGGTGAAGGCTTACCTAAATGGGGTGGATGCACCTGGAATATTTACTGTGCAAACTCTTGTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCATCACTTCTTATTGGGAAGGCAGGACCTATGGTGCATACAGGTGCATGTGTAGCAGCATTATTAGGTCAGGGTGGGTCAAAGAGATATGGGCTATCGTGGAAATGGTTACAGTTTTTTAAGAATGACCGTGATCGGAGAGATCTAATAACCTGTGGATCAGCTGCTGGAATGGCTGCTGCTTTCCGCGCCCCTGTTGGTGGTGTGTTGTTTGCTCTGGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCTGCAATAGTTGCAATATTGCTCCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCGAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGTTACTTGGCAGCTTATTTAATTTGCTGCTGAGCAAAGTTCTTCGGATATACAATTTTATCAATGAGAAAGGAACCATTTTTAAAATTTTGCTTGCTTGTGTAATCTCCATTTGTACATCCTGCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGCCCACCTAATCCAAGTGAACCTTGTCCTACAATCGGCCGGTCTGGTATCTACAAAAAGTTCCAGTGCGCTCCTAATCATTACAATGATCTTGCAAGCCTCATTTTCAACACAAATGATGATGCTATTAGAAATCTATTTAGCAAGAACACCGATGATGAGTTTGAGTTTACATCAATGCTAATCTTTTTCGTCACATGCTTTTTTTTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGCATCGTTGGAATGCTGCTTGGCAAAAACTCCGATCTTAACCATGGTCTTTTTGCTGTACTGGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGAACGACAGTTTCTCTGTGTGTAATTATTCTAGAACTCACCAACAACCTCTTATTGCTACCCTTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGGAAATATATATGACATTATAATGAAAGCCAAGGGTTTGCCATATTTAGAAACTCATGCTGAACCTTATATGAGACAGCTAACCGTAGGTGATGTAGTAACAGGTCCACTGCAGACATTTAATGGCATAGAAAAGGTTCGTAACATCGTGTTTATTCTCAAAAGTACAGGACATAACGGGTTTCCTGTTATTGACGAGCCTCCTATGTCGGAAGCTCCGGTGTTATTTGGCATAATCCTTCGTGACCATCTTCTCACATTGTTGAAGAAGAAAGCTTTTATATCCTCACCTGGGGCAACCAGTGGCGCCGTCTTTGATAATTTTGCATCCAATGATTTTGCAAAGAAGGGTTCAAGCAAAGTTCGTCTGAAGATAGAAGATATAGAGTTGTTGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATACTTCTCCTTATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGGGCGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACACGGCACGACTTCATTCCAGAACATATTTTGGGTTTGCATCCCTTTCTGGCAACACAAATTTGGTCATCAGAGCAACACTCACATATTCTTGCTAAAGCTGTTTTGGGCATCTGA 2286 0.4252 MSINHLRNGDSEPLLRQTLLSSSQRSIVNSTSQVAIVGVNVSPIESLDYEIFENEFFKQDWRSRGKPCRFLQQSRGGESRWYQVCGYLQYDVGEELGISRRFQLAFFIFFVSNLGLTLFASLITAFIAPAATGSGIPEVKAYLNGVDAPGIFTVQTLVVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYGLSWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGLLGSLFNLLLSKVLRIYNFINEKGTIFKILLACVISICTSCLLFGLPWFTSCRPCPPNPSEPCPTIGRSGIYKKFQCAPNHYNDLASLIFNTNDDAIRNLFSKNTDDEFEFTSMLIFFVTCFFLSIFSYGVVAPAGLFVPVIVTGASYGRIVGMLLGKNSDLNHGLFAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNGNIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTFNGIEKVRNIVFILKSTGHNGFPVIDEPPMSEAPVLFGIILRDHLLTLLKKKAFISSPGATSGAVFDNFASNDFAKKGSSKVRLKIEDIELLEEEMDMFIDLHPFTNTSPYTVVETMSLGKALTLFRALGLRHLLVIPKISSRSPVVGILTRHDFIPEHILGLHPFLATQIWSSEQHSHILAKAVLGI 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01080 761 SUPERFAMILY CBS-domain pair 553 729 IPR046342 -
Vimu7g01080 761 CDD CBS_pair_voltage-gated_CLC_euk_bac 553 731 - -
Vimu7g01080 761 Gene3D Clc chloride channel 80 550 - -
Vimu7g01080 761 Gene3D - 551 731 IPR046342 -
Vimu7g01080 761 PRINTS Plant CLC chloride channel signature 245 253 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g01080 761 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g01080 761 PRINTS Plant CLC chloride channel signature 401 417 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g01080 761 PRINTS Plant CLC chloride channel signature 259 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g01080 761 PRINTS Plant CLC chloride channel signature 277 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vimu7g01080 761 SUPERFAMILY Clc chloride channel 102 552 IPR014743 -
Vimu7g01080 761 ProSiteProfiles CBS domain profile. 679 739 IPR000644 -
Vimu7g01080 761 SMART cbs_1 570 623 IPR000644 -
Vimu7g01080 761 SMART cbs_1 682 733 IPR000644 -
Vimu7g01080 761 Pfam Voltage gated chloride channel 117 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 PRINTS Chloride channel signature 129 146 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 PRINTS Chloride channel signature 499 518 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 PRINTS Chloride channel signature 537 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 PRINTS Chloride channel signature 224 243 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 PRINTS Chloride channel signature 160 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 PRINTS Chloride channel signature 449 469 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 PRINTS Chloride channel signature 481 497 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vimu7g01080 761 Pfam CBS domain 680 729 IPR000644 -
Vimu7g01080 761 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 102 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01080 Vimu-Chr7 10667913 10672503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01080 8 745 Ion Channels AT5G33280 69.761 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01080 K05016 - gmx:100817901 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01080 7 10667913 10672503 Vimu7g01080 7 10667913 10672503 ECH