Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01079 ATGGCCATTTCTGCGTTATTCTTGGTTGTGCTGCTGCAATTGTCAACAATTTTTGGCTCGGAGGTTGTCTTACAGTCAAAGGAATGTGGCACTGATTGGGTGGCACATTCATATTCTAGTCATGGTCCGGAACTTTTCTACATAAACGGCAATGTAGTGGACAAGGTTGCTTTCTGTGAGGCTCTCCAATCGTATACTGAGAAGGGGTGTGATGTGAACGACTACTTTGGAAGTGTTAAATGTGTGACGGATGTTTCTTTTGTGGATTTTCCTTTAAAGGCAGGGAGGAAACTTCTTAAAAAGGATTCAAATACCGAATCTAAACCGCAAGGTGATTCTAAGCCTAACCCAGCCCACGTGGTTGGTATTTCTGCAGGGGGAGCTCTGTTTGCATGTTGTCTTGTTCTTTGTCCTTGTTTCTTTAAGAGAAGGAAAGCAACTTCTCATGCTGTTCTGAGCAAGGACCCCAATTCAATGGATTCCGTTTCCTCCTTTGAAGCCTCCGTTAATGACAAAATTCCGGCCAGTCCACTACGAGTGCCAGCTAGTCCGTCAAGATTCTCAATGTATCCAAAACTCAGTAGACTTCAATCATTGCATCTTGATCTGAACCAAGTTACAAGAGCTACTAATAACTTCTCAGAAACATTGCAAATAGGAGAAGGGGGTTTTGGAACTGTCTACAAGGCCAAATTGGAAGATGGTCTGGTCGTGGCTGTAAAACGTGCGAAAAAGGAACATTTTGATAGTTTGAGAGCAGAATTCAGCAGTGAAGTTCAACTTCTGGCCAAAATTGATCACCGAAACCTGGTGAAGCTACTAGGTTATATTGACAAAGGAAATGAACGCCTTCTTATTACAGAGTTTGTGCCAAATGGTACCCTGAGAGAACATTTGGATGGCATGCGTGGAAAAACACTAGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGCTTGACCTATCTACATCTGTATGCAGAAATTGTGTCTGGCCGCCGTCCCGTTGAGTTGAAGAAAACTGTTGAAGAGCGTGTTACACTTAGATGGGCCTTCAAGAAGTACAACGAAGGAAGTGTAGTGGAACTTGTGGATCCTTTAATGGAAGAAGCAGTAAACACAGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCACCCATTCGAGCAGATAGACCAGACATGAAATCGGTGAGCGAGCAGTTGTGGGCAATAAGGGCAGATTATCTCAAGAGTGCAAGGAGAACATGA 1269 0.4318 MAISALFLVVLLQLSTIFGSEVVLQSKECGTDWVAHSYSSHGPELFYINGNVVDKVAFCEALQSYTEKGCDVNDYFGSVKCVTDVSFVDFPLKAGRKLLKKDSNTESKPQGDSKPNPAHVVGISAGGALFACCLVLCPCFFKRRKATSHAVLSKDPNSMDSVSSFEASVNDKIPASPLRVPASPSRFSMYPKLSRLQSLHLDLNQVTRATNNFSETLQIGEGGFGTVYKAKLEDGLVVAVKRAKKEHFDSLRAEFSSEVQLLAKIDHRNLVKLLGYIDKGNERLLITEFVPNGTLREHLDGMRGKTLDFNQRLEIAIDVAHGLTYLHLYAEIVSGRRPVELKKTVEERVTLRWAFKKYNEGSVVELVDPLMEEAVNTDVLMKMFDLAFQCAAPIRADRPDMKSVSEQLWAIRADYLKSARRT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01079 422 Gene3D Phosphorylase Kinase; domain 1 184 289 - -
Vimu7g01079 422 Gene3D Transferase(Phosphotransferase) domain 1 331 421 - -
Vimu7g01079 422 SUPERFAMILY Protein kinase-like (PK-like) 195 411 IPR011009 -
Vimu7g01079 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 330 413 - -
Vimu7g01079 422 ProSitePatterns Protein kinases ATP-binding region signature. 219 245 IPR017441 GO:0005524
Vimu7g01079 422 ProSiteProfiles Protein kinase domain profile. 213 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01079 422 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 185 289 - -
Vimu7g01079 422 Pfam Protein tyrosine and serine/threonine kinase 218 327 IPR001245 GO:0004672|GO:0006468
Vimu7g01079 422 Gene3D Transferase(Phosphotransferase) domain 1 291 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01079 Vimu-Chr7 10661330 10667156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01079 116 327 Receptor kinase-like Gene Family AT3G46290 36.239 9.25e-31 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vimu7g01079 PK_Tyr_Ser-Thr 6.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01079 - - gmx:100305423 557.755