Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01059 ATGGCGGTGAAAGGCATGAAGGAGGCACTCCAAAAAAATGCTAAAACCTTGTTGGACATAAGACAGAGAAGAAGTGCGGTTGCTGGGCTGTCCTTAAACGCGGTGTTAGAGGTGCGTGCAAACCTTCAGCTTCCAGAGACTCTGCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGAACCCTTTTCTTCATCTTCTTGTTTCAGACACTGTAAGCATAGCTAACTGCATGATTCCTTCGAAGGAACCAACCGAGACAAGATACCTGAATGCTAGCAATCGAGAACTTTGTCCTCCCCTTGAAGCTCGATTATCTTCTGATAACCCTGATCCCCCACCCCAGGAGAACAAGGCTGCATGCCAGCTCCTTCAATTTTCATTTCAAGAACTTAAAGCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGGGAAGGTGGCTTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACCTCGCCAGCTAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATTCTAACCTTGTGAAACTTATCGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTATGAGGTTAAGATTGCCCTTGGGGCAGCAAAAGGATTGGCCTTCCTCCACAATGGTCCAGAACCAGTCATTTATAGAGATTTTAAAACATCTAATATTTTGCTGGATACGGAGTATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAAACACATGTTTCTACCAGAGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGGCACTTGACTGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTGCTTGAGATACTAACAGGAAGAAGATCAATGGACAAGAAGCGTCCGAGTGGGGAGCAAAATCTTGTTTCTTGGGCTAGGCCATACTTAGCTGACAAGCGAAAGCTGTACCAGCTTGTGGATCCTCGCCTGGAGCTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAGCTGCCTCAGCAGAGACCCTAAATCTCGCCCCAACATGGATGAAGTTGTGAAAGCGCTGACTCCATTGCAGGGACTTAATGACCTTGCAATTTTGTCTTATCACTCTCGCTTGTCTCAGCAAGGGAGACGGAAGAAGAAAGATGGAACTCCACACATCACATACACACAATCCAAGAGCATGAGGGCCTCTCCTTTGAATACCAGCAAGCAGCATCGGTGA 1347 0.4521 MAVKGMKEALQKNAKTLLDIRQRRSAVAGLSLNAVLEVRANLQLPETLLTLSLVLVSFMMQNPFLHLLVSDTVSIANCMIPSKEPTETRYLNASNRELCPPLEARLSSDNPDPPPQENKAACQLLQFSFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTSPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHSNLVKLIGYCIEDDQRLLVYEVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKSRPNMDEVVKALTPLQGLNDLAILSYHSRLSQQGRRKKKDGTPHITYTQSKSMRASPLNTSKQHR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01059 448 MobiDBLite consensus disorder prediction 412 448 - -
Vimu7g01059 448 ProSitePatterns Protein kinases ATP-binding region signature. 145 177 IPR017441 GO:0005524
Vimu7g01059 448 SUPERFAMILY Protein kinase-like (PK-like) 123 396 IPR011009 -
Vimu7g01059 448 ProSiteProfiles Protein kinase domain profile. 139 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01059 448 PANTHER OS01G0588500 PROTEIN-RELATED 119 399 - -
Vimu7g01059 448 Pfam Protein tyrosine and serine/threonine kinase 143 223 IPR001245 GO:0004672|GO:0006468
Vimu7g01059 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Vimu7g01059 448 Gene3D Transferase(Phosphotransferase) domain 1 219 408 - -
Vimu7g01059 448 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 214 404 - -
Vimu7g01059 448 Pfam Protein kinase domain 226 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01059 448 Gene3D Phosphorylase Kinase; domain 1 109 218 - -
Vimu7g01059 448 FunFam Serine/threonine-protein kinase BIK1 107 224 - -
Vimu7g01059 448 MobiDBLite consensus disorder prediction 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01059 Vimu-Chr7 10381979 10385474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01059 118 410 Glycoside Hydrolase AT3G07070 50.000 2.59e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g01059 Pkinase 2.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01059 - - aprc:113848012 694.886