Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01055 ATGATAAAGGACGATGAAGAGGATGCAGAAGATATAGTGGGTTGGCCACCGGTAAACTATTGGAGGAAGAAACTTCGTGTCGACCATGACGAGGTTGTAGGAAAAAACGATCACGTGGTATGGGTTGACCGGTGTCACGGCCATGGTTCCAGTTCTTCAAAGTCTCTGTACGTGAAGGTGAAGATGGAGGGTGTGGGAATTGCGCGGAAGGTAGATCTTGGCATGCACCAATCCTTTGAGACGCTGATGGAAACCTTGATGGACATGTTTGGAACAGGTCATCAAGAATCAAACAGCTATGAATTGGCTTATCAGGATAAGGAAGGTGACTGGCTTCTGGCACAAGATGTACCTTGGAGGCAAGTCTATACCTAA 375 0.4693 MIKDDEEDAEDIVGWPPVNYWRKKLRVDHDEVVGKNDHVVWVDRCHGHGSSSSKSLYVKVKMEGVGIARKVDLGMHQSFETLMETLMDMFGTGHQESNSYELAYQDKEGDWLLAQDVPWRQVYT 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01055 124 Gene3D - 49 124 - -
Vimu7g01055 124 ProSiteProfiles PB1 domain profile. 55 124 IPR000270 GO:0005515
Vimu7g01055 124 Pfam AUX/IAA family 97 120 IPR033389 -
Vimu7g01055 124 Pfam AUX/IAA family 8 91 IPR033389 -
Vimu7g01055 124 SUPERFAMILY CAD & PB1 domains 50 121 - -
Vimu7g01055 124 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 120 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01055 Vimu-Chr7 10332365 10332789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01055 59 121 B3 DNA Binding Superfamily AT3G61830 35.385 1.04e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu7g01055 AUX_IAA 9e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01055 K14484 - gmx:100808466 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01055 7 10332365 10332789 Vimu7g01055 7 10332365 10332789 ECH