Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01051 ATGTTTTTGCTCCGCGTCCACTCAGTGGACGCCGACCACCCTCTCGATCCCCAAACCATCTTCCGATCCCATTCCCAATCCAACAACCCTAAATTCAGCGAACGCAGAGGCGCACTCCACTTGTTCCGAACCTCTCCCCGCTCCTCCCTCCCAACCCAAACCTCCCCCTCCACTCTCCTTTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCCACGACTTCATCCCCTTCTGCGGGCCCCACCTCGACAACTTTTACCACCTTCTCTTCATCAGGAACGACGGCACGGAAGATCGCTATAGCGTGTTGATAAAGTTTGCCGATCAGTTCGCCGCCGATGAATTTTACAGCTATTTCAATGGCAGGAAATTTTCTCCCGCCGAGGCAGAGGTGTGCCATATTTTGTTTTTGCAATCCGTGGAGTATTCGGAGTATGCAGAAGTTGCTGGGACTCCTCCTCCTGGTTGTACGGAAATACCAACTTGCCCAGTTTGTCTTGAGAGGTTGGACCCTGATACAAGTGGAATAATGACAACACTTTGTGATCACTCATTTCAATGCCCATGTGTCTCCAAATGGACGTACTTGTCTTGCCAGCAACAGGATGAGAAACCAAATTGTTTCATTTGTGGAACTATAGATGATCTTTGGGTTTGTATGATTTGTGGGTTTGTTGGATGTGGAAGATATAAAGAAGGGCATGCTATTCAGCATTGGAAAGATACTCAGCATTGCTATTCTCTTGATTTTAAAACACAACAAATTTGGGATTATGTTGGTGACAGCTATGTACACCGATTGAACCAGAACCAATCTAAAATTGATGGCAAGTTGGAGGAGACAAATTTTCGCTGTATGTCACTGGAAGGAGATTGTGATACGTGTGAATGTCCTGAAGATTTAGGAATTAACGGGGCACTTTTCAACAGCAAAGTTGAAACATATTATGAATCTTTACTAGTAGAGGCAAGAAGTAAAATGGAAAGTTCCATGACTGAAGCAGTGGAGAAAGCTGCAGCTTCTGAAATGCAGGATATGCAAAATGAACTGGAAAAGTGGACAGAAGAAAGAAATGCCATTGCTGAGGTCAATCAGAAACTCATAAAAAATCAAGACATTTGGCGAAAGAAAGTTAAAGAGGCTGAAGAGAGGGAAGCTACATCAACTAAAACGATGAATGAGAGGATAATTGATTTGGAGGAACAGATTAGAGATATCAAGATCTTTCTGGAAGCGCAAAAAACAATTGATAAAATGTCAGATTCAAATGGAATCAAGGATGGAACAGTCCTACCTGTGGCTTATGAGTCTTCTACAGGTCACAAAAAGAGAAATAAAAAGTCTGGTCGAAGGCGGAATTAG 1362 0.4376 MFLLRVHSVDADHPLDPQTIFRSHSQSNNPKFSERRGALHLFRTSPRSSLPTQTSPSTLLFILAVPNYLSFHDFIPFCGPHLDNFYHLLFIRNDGTEDRYSVLIKFADQFAADEFYSYFNGRKFSPAEAEVCHILFLQSVEYSEYAEVAGTPPPGCTEIPTCPVCLERLDPDTSGIMTTLCDHSFQCPCVSKWTYLSCQQQDEKPNCFICGTIDDLWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQNQSKIDGKLEETNFRCMSLEGDCDTCECPEDLGINGALFNSKVETYYESLLVEARSKMESSMTEAVEKAAASEMQDMQNELEKWTEERNAIAEVNQKLIKNQDIWRKKVKEAEEREATSTKTMNERIIDLEEQIRDIKIFLEAQKTIDKMSDSNGIKDGTVLPVAYESSTGHKKRNKKSGRRRN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01051 453 Pfam BRCA1-associated protein 2 53 148 IPR011422 -
Vimu7g01051 453 MobiDBLite consensus disorder prediction 433 453 - -
Vimu7g01051 453 SMART Zf_UBP_1 206 255 IPR001607 GO:0008270
Vimu7g01051 453 PANTHER BRCA1-ASSOCIATED PROTEIN 314 452 - -
Vimu7g01051 453 Pfam Zn-finger in ubiquitin-hydrolases and other protein 207 267 IPR001607 GO:0008270
Vimu7g01051 453 ProSiteProfiles Zinc finger RING-type profile. 162 210 IPR001841 -
Vimu7g01051 453 Coils Coil 336 384 - -
Vimu7g01051 453 ProSiteProfiles Zinc finger UBP-type profile. 179 285 IPR001607 GO:0008270
Vimu7g01051 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 301 IPR013083 -
Vimu7g01051 453 CDD RING-H2_BRAP2 160 198 IPR047243 -
Vimu7g01051 453 SUPERFAMILY RING/U-box 177 271 - -
Vimu7g01051 453 CDD RRM_BRAP2_like 60 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01051 Vimu-Chr7 10275176 10279433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01051 161 242 C3H Transcription Factor Family AT2G39100 30.488 7.03e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01051 K10632 - gmx:100807397 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01051 7 10275176 10279433 Vimu7g01051 7 10275176 10279433 ECH