Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01036 ATGACAAGCTGCGGCATCGATGTTGCGCCCGAGCAACTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGTCAAATAAAAGTCATATCTGGAGAGGACCTCAAGAAGGTCACCCATACACACAAAAACAAAACCATACACACACGGTGTTTTCCCCTTCCCGTTCTGAGCAAGTGCGGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCCGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTCCACCCACCACTAATGTAACTGAGGAAAGGGTTGTCAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCTTTCAGTACAGCTGCGAAAAACTGGGCACATTTTCCCCATATTCACTTCGGGCTGATGCTGGATAGCAACAACCAGGCTAAGATGGAAAATGTAAGTACATACACAGAAGCAAATATATATATTTTTCTTTTATCTGTAAAAAATAAATGA 681 0.4626 MTSCGIDVAPEQLCYIPCNFCNIVLASNKSHIWRGPQEGHPYTQKQNHTHTVFSPSRSEQVRVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRPPTTNVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSTYTEANIYIFLLSVKNK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01036 226 Pfam YABBY protein 62 195 IPR006780 GO:0007275
Vimu7g01036 226 SUPERFAMILY HMG-box 139 188 IPR036910 -
Vimu7g01036 226 CDD HMG-box_SF 149 185 - -
Vimu7g01036 226 FunFam Axial regulator YABBY 140 212 - -
Vimu7g01036 226 PANTHER PROTEIN YABBY 6-RELATED 61 205 IPR006780 GO:0007275
Vimu7g01036 226 Gene3D High mobility group box domain 134 191 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01036 Vimu-Chr7 10106970 10110026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01036 8 205 C2C2-YABBY Transcription Factor Family AT2G26580 63.131 2.51e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu7g01036 YABBY 2.8e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01036 K25796 - gmx:100499942 335.495