Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01032 ATGAATGAACGTCGAAAAAACATGAATGTCAGGAGAAAGATCGGGAAGTATGAGGTGGGGCGAACTATTGGCGAAGGCACGTTCGCCAAGGTCAAGTTCGCCAGAAATTCTGAAACAGGGGAGAGCGTGGCCATTAAAACCATGGCTAAGACCACCATTCTCCAGCACAGAATGGTTGAGCAGGTTGACCTTGTTACTTTCAACTGCTCCGAGAATCAGAGGGAATGTCAATTGTTGGAGACGGAAGTGGTCAGGTTGCTCGCGGGAGAGGCTGATGTTGAGATTAAAAGAGAGATATCGATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGGTTTTGGCTAGCAAGACTAAGATCTACATAATCCTTGAATTTGTGATGGGAGGGGAACTATATGACAAAATTGTTCAGCAGGGAAGGCTTTCTGAAAATGAATCTAGGCGCTATTTTCAACAACTTATAGACGCTATTGATCATTGTCATAAAAAGGGTGTGTATCATAGAGACCTGAAGCCCGAAAACCTCCTTCTTGATGCTTTTGGAAATTTGAAAGTTTCTGACTTTGGATTGAGTGCATTGACTGAAAAGGGTGTTGGCCTTCTTCACACCACTTGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTCGGCAATCGAGGATATAATGGTGCTGCAGCTGACGTTTGGTCATGTGGGGTCATCCTATATGTTCTACTAGCCGGATATCTTCCTTTTGAGGAGCCTGACCTTCCAACTTTGTACAGAAGGGTTCCCCCCATTCCCTTCAAGGGGAAACAAACAGTCCGGGACTGTCTGGGATACCACGAGGAATCTTTTATCAATGCTGCAGAGTATGTCTGCCCATTCTGGTTTTCTGCTGAGACAAAGTCATTCATACATAAAATTCTAGATCCTAATCCAGAAACAAGGGTGAAAATTGAAGAAATAAGGAAAGTTCCATGGTTCCAGAAAAACTATTTTCCTGTCAAACTCAGGGAATGTGAGCAAGTAAATTTGGATGATGTTCGGGCTGTTTTTGATGATATTGAGGACCAATATGTTGCTGAAAAGTCAGAAATTACCGAGGGAGGTCCTTTCATAATGAATGCATTTGAGATGATTTCCTTATCACAAGGATTGAATCTTTCACCATTGTTTGATAGGCACCAGGATTATGTAAAGCGACAAACACGTTTTGTCTCCCGTAAACCAGCAAAAGTTATAATTTCTTCTGTTGAAGCTGTTGCAGAGTCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGGTGAGGCTAGAAGGTGTTTCTGTAAACAAGGTTGGGCAACTGGCAGTGGTCTTGGAGGTTTTTGAAGTCGCTCCATCCCTTTTCATGGTTGATATTCGGAAGGCAGCTGGGGACACTTTTGACTACCACAAGACTCATGGATTCATGTTGACAGTGTTCCGGAATTTGAGAATACTTGTGGATCTTATATGTTTGGGTCACACTTGTCATGCTTTCTCCTCTCTTCTCTCCGGCCAAAAGTTTGTGCACCGAGAGCTTCAGTTGGTCTCCGAGTATCCTAAAAAGTTGACATACTTTGTTGCTATCATAATGCAATGTGCAATGCATGAATACTATTGTGAACGGGTGTCGCCGTCTACTTACCACACGGCTTGGCTTGGCTTGGCTTAA 1689 0.4328 MNERRKNMNVRRKIGKYEVGRTIGEGTFAKVKFARNSETGESVAIKTMAKTTILQHRMVEQVDLVTFNCSENQRECQLLETEVVRLLAGEADVEIKREISIMKIVRHPNIVRLHEVLASKTKIYIILEFVMGGELYDKIVQQGRLSENESRRYFQQLIDAIDHCHKKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTEKGVGLLHTTCGTPNYVAPEVLGNRGYNGAAADVWSCGVILYVLLAGYLPFEEPDLPTLYRRVPPIPFKGKQTVRDCLGYHEESFINAAEYVCPFWFSAETKSFIHKILDPNPETRVKIEEIRKVPWFQKNYFPVKLRECEQVNLDDVRAVFDDIEDQYVAEKSEITEGGPFIMNAFEMISLSQGLNLSPLFDRHQDYVKRQTRFVSRKPAKVIISSVEAVAESMGLKVHSRNYKVRLEGVSVNKVGQLAVVLEVFEVAPSLFMVDIRKAAGDTFDYHKTHGFMLTVFRNLRILVDLICLGHTCHAFSSLLSGQKFVHRELQLVSEYPKKLTYFVAIIMQCAMHEYYCERVSPSTYHTAWLGLA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01032 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vimu7g01032 562 SMART serkin_6 17 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01032 562 CDD CIPK_C 373 479 - -
Vimu7g01032 562 FunFam Non-specific serine/threonine protein kinase 366 493 - -
Vimu7g01032 562 Gene3D Transferase(Phosphotransferase) domain 1 7 367 - -
Vimu7g01032 562 SUPERFAMILY Protein kinase-like (PK-like) 14 383 IPR011009 -
Vimu7g01032 562 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 477 - -
Vimu7g01032 562 Gene3D Kinase associated domain 1, KA1 368 498 - -
Vimu7g01032 562 FunFam Maternal embryonic leucine zipper kinase 85 349 - -
Vimu7g01032 562 Pfam Protein kinase domain 17 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01032 562 ProSiteProfiles NAF domain profile. 367 391 IPR018451 GO:0007165
Vimu7g01032 562 Pfam NAF domain 371 428 IPR004041 GO:0007165
Vimu7g01032 562 ProSiteProfiles Protein kinase domain profile. 17 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01032 562 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01032 Vimu-Chr7 10042199 10050840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01032 12 434 CBL-interacting serine-threonine protein kinases AT5G35410 63.830 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu7g01032 Pkinase 1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01032 - - gmx:100811380 734.176