Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01023 TTGCTTCCTTCCACTCCTTTTCTCCCTTTATATCTACTGCTATTCTGTTCCTTCTGTACTTCCCCATCACTCTTTCTCACTCCCACCATCATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCCGAAATTCGTCACCCGCTTCTTAAGAGAAGGGTGTGGCTGGGGACGTTTGAAACGGCAGAAGAAGCTGCCAGAGCCTATGATCAAGCTGCTATTCTTATGAGTGGGAGAAATGCTAAAACAAATTTCCCAATAACTCAAACCCCTGAAGGTGATCCAAAGAGCATTACCAGTGAAGACACCCCCTCCTCCACCTCCAAGGATCTGGAGGAAATCCTGCATGCAAAGCTTCGAAAATGTGGTAAGGTACCTTCACCTTCTATGACCTGCTTGAGGCTTGACACTGAGAACTCCCACATCGGAGTGTGGCAAAAACGTGCTGGGAGACGTTCGGATTCAAATTGGGTCATGACAGTTCAGCTGGGAAAGAAGAGTACGGACAATGAGACTCATCAAGCTGATAGTAGCACTTCTCTTTCTCTACCTTCTTCCGATCACCACCACCACCACCACCGTGAGTCTCCATCGGGTGTGACAGGTCATCACCATCATGAAGAAGTGGTGAGAGGAGAGATTGATGAAGAAGAGAGAATCGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCCAGTCCTTCATTCAGCAACATTCAAGAAAGGGATGGTGGCGATGATGACACCTTTTTTCTTTAA 789 0.4753 MLPSTPFLPLYLLLFCSFCTSPSLFLTPTIMVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSITSEDTPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGKKSTDNETHQADSSTSLSLPSSDHHHHHHRESPSGVTGHHHHEEVVRGEIDEEERIALQMIEELLNDRNCPSPSFSNIQERDGGDDDTFFL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01023 262 MobiDBLite consensus disorder prediction 192 222 - -
Vimu7g01023 262 MobiDBLite consensus disorder prediction 91 116 - -
Vimu7g01023 262 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Vimu7g01023 262 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Vimu7g01023 262 MobiDBLite consensus disorder prediction 238 262 - -
Vimu7g01023 262 FunFam Ethylene-responsive transcription factor 2 35 94 - -
Vimu7g01023 262 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Vimu7g01023 262 MobiDBLite consensus disorder prediction 172 222 - -
Vimu7g01023 262 MobiDBLite consensus disorder prediction 91 112 - -
Vimu7g01023 262 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Vimu7g01023 262 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Vimu7g01023 262 MobiDBLite consensus disorder prediction 172 191 - -
Vimu7g01023 262 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Vimu7g01023 262 Pfam AP2 domain 36 84 IPR001471 GO:0003700|GO:0006355
Vimu7g01023 262 Gene3D AP2/ERF domain 35 95 IPR036955 GO:0003700|GO:0006355
Vimu7g01023 262 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01023 Vimu-Chr7 9965675 9966559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01023 31 237 AP2-EREBP Transcription Factor Family AT1G15360 59.624 1.02e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g01023 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01023 - - gmx:100814893 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01023 7 9965675 9966559 Vimu10g02956 10 40540945 40541647 ECH
Vimu7g01023 7 9965675 9966559 Vimu7g01023 7 9965675 9966559 ECH
Vimu7g01023 7 9965675 9966559 Vimu10g00897 10 7996986 7997783 PCT